Pavir.Ib04136 (Panicum virgatum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Pavir.Ib04136 T334679_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.731 0.886
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.701 0.886
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.701 0.886
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.654 0.659
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.654 0.659
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.602 0.773
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib04136.1.p Sox 121 164
Pavir.Ib04136.2.p Sox 121 164
Pavir.Ib04136.3.p Sox 121 164
Pavir.Ib04136.4.p Sox 80 123
Pavir.Ib04136.5.p Sox 118 161
Pavir.Ib04136.6.p Sox 77 120

Links

Other Sox family TFs
Other Panicum virgatum TFs

533 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PCH_Pc16g04820 Penicillium rubens PCH_Pc16g04820 N
PDIP_06180 Penicillium digitatum PDIP_06180 N
PEX1_048190 Penicillium expansum PEX1_048190 N
PITC_041350 Penicillium italicum PITC_041350 N
U727_00434201101 Penicillium solitum U727_00434201101 N
Pc16g04820 Penicillium chrysogenum Pc16g04820 N