Pavir.Ib04136 (Panicum virgatum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Pavir.Ib04136 T334679_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.731 0.886
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.701 0.886
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.701 0.886
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.654 0.659
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.654 0.659
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.602 0.773
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib04136.1.p Sox 121 164
Pavir.Ib04136.2.p Sox 121 164
Pavir.Ib04136.3.p Sox 121 164
Pavir.Ib04136.4.p Sox 80 123
Pavir.Ib04136.5.p Sox 118 161
Pavir.Ib04136.6.p Sox 77 120

Links

Other Sox family TFs
Other Panicum virgatum TFs

533 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000004034 Ailuropoda melanoleuca ENSAMEG00000004034 N
ENSBTAG00000008368 Bos taurus ENSBTAG00000008368 N
ENSBTAP00000011018-D1 Bos grunniens ENSBTAP00000011018-D1 N
ENSCAFG00000016470 Canis familiaris ENSCAFG00000016470 N
ENSECAG00000023454 Equus caballus ENSECAG00000023454 I
ENSFCAG00000023653 Felis catus ENSFCAG00000023653 N
ENSGGOG00000023919 Gorilla gorilla ENSGGOG00000023919 I
ENSLAFG00000031473 Loxodonta africana ENSLAFG00000031473 N
ENSMLUG00000030674 Myotis lucifugus ENSMLUG00000030674 N
ENSPSIG00000017477 Pelodiscus sinensis ENSPSIG00000017477 I
ENSSARG00000013877 Sorex araneus ENSSARG00000013877 I
ENSSSCG00000017507 Sus scrofa ENSSSCG00000017507 N
Myotis_brandtii_TFCP2L1_10030397 Myotis brandtii Myotis_brandtii_TFCP2L1_10030397 N