PK09461.1 (Cannabis sativa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 PK09461.1 T334926_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.741 1.000
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.741 1.000
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.707 0.932
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.630 0.659
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.630 0.659
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.596 0.750
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK09461.1 Sox 101 144

Links

Other Sox family TFs
Other Cannabis sativa TFs

531 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00053p00228660 Amborella trichopoda AMTR_s00053p00228660 I
Aquca_009_00337 Aquilegia coerulea Aquca_009_00337 I
Bo02907s010 Brassica oleracea Bo02907s010 I
ENSMICG00000005703 Microcebus murinus ENSMICG00000005703 I
Eucgr.G02427 Eucalyptus grandis Eucgr.G02427 I
gene19425-v1.0-hybrid Fragaria vesca gene19425-v1.0-hybrid I
Gorai.004G132000 Gossypium raimondii Gorai.004G132000 I
Gorai.005G221300 Gossypium raimondii Gorai.005G221300 I
Gorai.007G237300 Gossypium raimondii Gorai.007G237300 I
Gorai.008G115200 Gossypium raimondii Gorai.008G115200 I
GSMUA_Achr1G24060_001 Musa acuminata GSMUA_Achr1G24060_001 I
GSMUA_Achr8G12280_001 Musa acuminata GSMUA_Achr8G12280_001 I
GSMUA_Achr9G29320_001 Musa acuminata GSMUA_Achr9G29320_001 I
MDP0000148857 Malus domestica MDP0000148857 I
orange1.1g036058m.g Citrus sinensis orange1.1g036058m.g N
PK02524.1 Cannabis sativa PK02524.1 I
PK10580.1 Cannabis sativa PK10580.1 I
Pm018089 Prunus mume Pm018089 I
POPTR_0008s09780 Populus trichocarpa POPTR_0008s09780 I
PRUPE_ppa014428mg Prunus persica PRUPE_ppa014428mg I
SapurV1A.0176s0490 Salix purpurea SapurV1A.0176s0490 I
SapurV1A.1553s0010 Salix purpurea SapurV1A.1553s0010 I
Si030960m.g Setaria italica Si030960m.g I
TCM_000725 Theobroma cacao TCM_000725 N
Thhalv10006419m.g Eutrema salsugineum Thhalv10006419m.g I
Traes_7BS_4D5DE99CC Triticum aestivum Traes_7BS_4D5DE99CC I