CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SNAPOd2T00016000001
(
Oikopleura dioica
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
SNAPOd2T00016000001
T335052_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SNAPOd2T00016000001
Sox
90
164
PKRPLSAFFLFAAEHRPQVRKDLEKTNEGGKVRACDITKKIAVLWKAVEADEKAKFQKLADAEKSKYQDAMDAYK
Links
Other
Sox
family TFs
Other
Oikopleura dioica
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SNAPOd2T00016002001
Oikopleura dioica
SNAPOd2T00016002001
N
0.523
SNAPOd2T00005164001
Oikopleura dioica
SNAPOd2T00005164001
N
0.500
TTHERM_00257230
Tetrahymena thermophila
TTHERM_00257230
N
0.450
SMAR015352
Strigamia maritima
SMAR015352
N
0.429