fgeneshCV_pg.C_scaffold_4000123 (Chlorella vulgaris)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 fgeneshCV_pg.C_scaffold_4000123 T335237_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgeneshCV_pg.C_scaffold_4000123 Sox 3 76

Links

Other Sox family TFs
Other Chlorella vulgaris TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh1_pg.4_#_114 Coccomyxa subellipsoidea C169 fgenesh1_pg.4_#_114 N 0.741
30131.m007272 Ricinus communis 30131.m007272 I 0.489
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.469
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.468
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.468
Pm006054 Prunus mume Pm006054 I 0.468
MDP0000205665 Malus domestica MDP0000205665 I 0.468
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.468
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.466
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.466
Si014434m.g Setaria italica Si014434m.g N 0.466
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.466
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.466
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.465
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.464
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.464
OBART08G00070 Oryza barthii OBART08G00070 I 0.464
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.464
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.464
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.464
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.464
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.464
OS08G0101100 Oryza sativa OS08G0101100 I 0.464
Bo2g160920 Brassica oleracea Bo2g160920 I 0.459
Bra029371 Brassica rapa Bra029371 I 0.459
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.452
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.452
BRADI5G18460 Brachypodium distachyon BRADI5G18460 N 0.451
OB08G10120 Oryza brachyantha OB08G10120 N 0.445
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.445
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.442
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.437
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.437
Cla009222 Citrullus lanatus Cla009222 I 0.434
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.434
OESDEN_24828 Oesophagostomum dentatum OESDEN_24828 N 0.428
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.422
ACEP16621 Atta cephalotes ACEP16621 N 0.417