CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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D917_04157
(
Trichinella nativa
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
D917_04157
T336165_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
D917_04157
Sox
236
284
LCRPVSAYALFFRDTQATIKGQNPNASFGEVSKIVATLWDGLNADAKNV
D917_04157
Sox
327
358
NNLTSSERLFVVYKQKTESAKKDYLKQLAAYR
Links
Other
Sox
family TFs
Other
Trichinella nativa
TFs
21 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GLYMA16G22060
Glycine max
GLYMA16G22060
I
0.441
UCREL1_5722
Eutypa lata
UCREL1_5722
N
0.431
PEQ_0000006801
Parascaris equorum
PEQ_0000006801
N
0.474
EEL_0000370701
Elaeophora elaphi
EEL_0000370701
N
0.475
MDP0000699531
Malus domestica
MDP0000699531
N
0.445
Lus10035991.g
Linum usitatissimum
Lus10035991.g
N
0.454
Lus10027787.g
Linum usitatissimum
Lus10027787.g
N
0.427
Lus10016695.g
Linum usitatissimum
Lus10016695.g
N
0.454
Lus10013219.g
Linum usitatissimum
Lus10013219.g
N
0.448
fgenesh1_pg.C_scaffold_10000369
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_10000369
N
0.460
Cla010647
Citrullus lanatus
Cla010647
N
0.429
Ca_10726
Cicer arietinum
Ca_10726
N
0.462
BGIOSGA031227
Oryza indica
BGIOSGA031227
N
0.461
TriadG58720
Trichoplax adhaerens
TriadG58720
N
0.486
OPUNC09G17310
Oryza punctata
OPUNC09G17310
N
0.461
OLONG_009629
Oryza longistaminata
OLONG_009629
N
0.448
OGLUM09G19410
Oryza glumaepatula
OGLUM09G19410
N
0.461
OBART09G18880
Oryza barthii
OBART09G18880
N
0.461
HelroG178674
Helobdella robusta
HelroG178674
N
0.436
CRE07740
Caenorhabditis remanei
CRE07740
N
0.458
Bra012832
Brassica rapa
Bra012832
N
0.462