CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GPLIN_000839700
(
Globodera pallida
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
GPLIN_000839700
T336346_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GPLIN_000839700
Sox
133
198
PSAYALFFRDVQREVREELGTEKGSANFGEVSRAVAKRWKKMGRAEKAVYRLHVQRLKRAQIRESA
Links
Other
Sox
family TFs
Other
Globodera pallida
TFs
20 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
RSKR_0000620800
Rhabditophanes kr3021
RSKR_0000620800
N
0.464
ASIM_0000224701
Anisakis simplex
ASIM_0000224701
N
0.450
EFV52201
Trichinella spiralis
EFV52201
N
0.439
ENSAMXG00000016832
Astyanax mexicanus
ENSAMXG00000016832
N
0.428
LOAG_15875
Loa loa
LOAG_15875
N
0.426
GPUH_0001659301
Gongylonema pulchrum
GPUH_0001659301
N
0.426
ENSTGUG00000014902
Taeniopygia guttata
ENSTGUG00000014902
N
0.425
DME_0000632401
Dracunculus medinensis
DME_0000632401
N
0.425
BXY_0575000
Bursaphelenchus xylophilus
BXY_0575000
N
0.424
ENSCING00000003572
Ciona intestinalis
ENSCING00000003572
N
0.419
ENSCSAVG00000009396
Ciona savignyi
ENSCSAVG00000009396
N
0.419
TOX2
Sorex araneus
ENSSARG00000001080
N
0.419
tox2
Takifugu rubripes
ENSTRUG00000013848
N
0.419
PHUM393920
Pediculus humanus
PHUM393920
N
0.419
ENSMMUP00000034886
Macaca fascicularis
ENSMMUP00000034886
N
0.419
PEQ_0000291001
Parascaris equorum
PEQ_0000291001
I
0.419
L798_00437
Zootermopsis nevadensis
L798_00437
N
0.418
AMIN005634
Anopheles minimus
AMIN005634
N
0.418
TCNE_0000652201
Toxocara canis
TCNE_0000652201
N
0.418
ASIM_0001613301
Anisakis simplex
ASIM_0001613301
N
0.415