CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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NBR_0001541101
(
Nippostrongylus brasiliensis
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
NBR_0001541101
T336661_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
NBR_0001541101-mRNA-1
Sox
44
107
KRRSAYAFSIFANEEREKLLQTHPDLPMGIVTRMMVEKWKSLNSESKAPYFDAARTSPLRTKKP
Links
Other
Sox
family TFs
Other
Nippostrongylus brasiliensis
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TELCIR_05566
Teladorsagia circumcincta
TELCIR_05566
N
0.672
HCOI01490000
Haemonchus contortus
HCOI01490000
N
0.668
SVUK_0000188101
Strongylus vulgaris
SVUK_0000188101
N
0.578
ACAC_0001369201
Angiostrongylus cantonensis
ACAC_0001369201
N
0.561
ANCCAN_02453
Ancylostoma caninum
ANCCAN_02453
N
0.548
Si011290m.g
Setaria italica
Si011290m.g
N
0.434
Hba_07528
Heterorhabditis bacteriophora
Hba_07528
N
0.430