CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PXEA_0001273001
(
Protopolystoma xenopodis
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
PXEA_0001273001
T336840_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PXEA_0001273001-mRNA-1
Sox
6
74
LRKPPSGYVIYAGEVRKKLLQDKPDAPFGEISREVGLMWRQMPMHERDVYERKAQLIKRRMADEETNSK
Links
Other
Sox
family TFs
Other
Protopolystoma xenopodis
TFs
15 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ECANG7_01394
Echinococcus canadensis
ECANG7_01394
N
0.661
EmuJ_000829600
Echinococcus multilocularis
EmuJ_000829600
N
0.661
TsM_000416400
Taenia solium
TsM_000416400
N
0.661
DILT_0000112601
Diphyllobothrium latum
DILT_0000112601
N
0.638
HmN_000514500
Hymenolepis microstoma
HmN_000514500
N
0.627
HNAJ_0000040201
Hymenolepis nana
HNAJ_0000040201
N
0.627
Smp_128120
Schistosoma mansoni
Smp_128120
N
0.567
A_04259
Schistosoma haematobium
A_04259
N
0.567
SCUD_0001647201
Schistosoma curassoni
SCUD_0001647201
N
0.567
SMTD_0001069201
Schistosoma mattheei
SMTD_0001069201
N
0.567
ECPE_0001508301
Echinostoma caproni
ECPE_0001508301
N
0.562
TRE_0001759501
Trichobilharzia regenti
TRE_0001759501
N
0.561
csin107639
Clonorchis sinensis
csin107639
N
0.545
T265_05798
Opisthorchis viverrini
T265_05798
N
0.545
SMU15005401
Schmidtea mediterranea
SMU15005401
N
0.472