CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
scaffold593-EXSNAP2012.5
(
Pristionchus exspectatus
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
scaffold593-EXSNAP2012.5
T336910_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold593-EXSNAP2012.5
Sox
43
87
PKRGASAYMLWLKDNRSRLTKPGMSVIDVSKQAGVEWNAVKNSQS
Links
Other
Sox
family TFs
Other
Pristionchus exspectatus
TFs
55 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PPA12247
Pristionchus pacificus
PPA12247
N
0.693
OESDEN_18796
Oesophagostomum dentatum
OESDEN_18796
N
0.571
ANCCAN_19939
Ancylostoma caninum
ANCCAN_19939
N
0.522
ANCDUO_24269
Ancylostoma duodenale
ANCDUO_24269
N
0.516
Sakowv30021656m.g
Saccoglossus kowalevskii
Sakowv30021656m.g
N
0.505
HPBE_0001796801
Heligmosomoides bakeri
HPBE_0001796801
N
0.505
WBGene00237022
Onchocerca volvulus
WBGene00237022
N
0.492
BTMF_0000229601
Brugia timori
BTMF_0000229601
N
0.492
ACAC_0000798501
Angiostrongylus cantonensis
ACAC_0000798501
N
0.491
ACOC_0001190001
Angiostrongylus costaricensis
ACOC_0001190001
N
0.491
NECAME_14932
Necator americanus
NECAME_14932
N
0.486
OFLC_0000496201
Onchocerca flexuosa
OFLC_0000496201
N
0.482
SMUV_0000634201
Syphacia muris
SMUV_0000634201
N
0.475
ENSCING00000000505
Ciona intestinalis
ENSCING00000000505
I
0.470
SBAD_0000070901
Soboliphyme baturini
SBAD_0000070901
I
0.459
WUBG_06999
Wuchereria bancrofti
WUBG_06999
N
0.457
LOAG_08062
Loa loa
LOAG_08062
N
0.457
GPUH_0002275001
Gongylonema pulchrum
GPUH_0002275001
N
0.457
SVUK_0001721701
Strongylus vulgaris
SVUK_0001721701
N
0.457
TCLT_0000071201
Thelazia callipaeda
TCLT_0000071201
N
0.457
EEL_0000629001
Elaeophora elaphi
EEL_0000629001
N
0.455
nAv.1.0.1.g09805
Acanthocheilonema viteae
nAv.1.0.1.g09805
N
0.455
PEQ_0000291001
Parascaris equorum
PEQ_0000291001
I
0.454
fgenesh2_pg.scaffold_4000274
Monosiga brevicollis
fgenesh2_pg.scaffold_4000274
N
0.444
ASIS014204
Anopheles sinensis
ASIS014204
N
0.442
HPBE_0002310801
Heligmosomoides bakeri
HPBE_0002310801
N
0.441
DME_0000590001
Dracunculus medinensis
DME_0000590001
N
0.439
GPUH_0000029001
Gongylonema pulchrum
GPUH_0000029001
N
0.437
CpipJ_CPIJ003178
Culex pipiens
CpipJ_CPIJ003178
N
0.433
CPIJ003178
Culex quinquefasciatus
CPIJ003178
N
0.433
AEPI010254
Anopheles epiroticus
AEPI010254
N
0.433
ALUE_0001190701
Ascaris lumbricoides
ALUE_0001190701
N
0.433
TCNE_0000520101
Toxocara canis
TCNE_0000520101
N
0.433
scaffold_600397.1
Arabidopsis lyrata
scaffold_600397.1
I
0.431
BTMF_0000420901
Brugia timori
BTMF_0000420901
N
0.431
NEMVEDRAFT_v1g59568
Nematostella vectensis
NEMVEDRAFT_v1g59568
N
0.430
L798_00437
Zootermopsis nevadensis
L798_00437
N
0.427
PHUM393920
Pediculus humanus
PHUM393920
N
0.427
AMAM014030
Anopheles maculatus
AMAM014030
N
0.427
AMIN005634
Anopheles minimus
AMIN005634
N
0.427
HETIRDRAFT_439796
Heterobasidion irregulare
HETIRDRAFT_439796
I
0.424
estExt_fgenesh3_kg.C_170031
Heterobasidion annosum
estExt_fgenesh3_kg.C_170031
I
0.424
CBN04053
Caenorhabditis brenneri
CBN04053
N
0.423
ANCCAN_21637
Ancylostoma caninum
ANCCAN_21637
N
0.421
ANCCEY_10464
Ancylostoma ceylanicum
ANCCEY_10464
N
0.421
ANCDUO_11855
Ancylostoma duodenale
ANCDUO_11855
N
0.421
DICVIV_01337
Dictyocaulus viviparus
DICVIV_01337
N
0.421
NECAME_10840
Necator americanus
NECAME_10840
N
0.421
SVUK_0001398701
Strongylus vulgaris
SVUK_0001398701
N
0.421
Ocbimv22010533m.g
Octopus bimaculoides
Ocbimv22010533m.g
N
0.419
HCOI00417600
Haemonchus contortus
HCOI00417600
N
0.415
HPLM_0000803901
Haemonchus placei
HPLM_0000803901
N
0.415
NBR_0001132501
Nippostrongylus brasiliensis
NBR_0001132501
N
0.415
TELCIR_05217
Teladorsagia circumcincta
TELCIR_05217
N
0.415
TELCIR_22690
Teladorsagia circumcincta
TELCIR_22690
N
0.415