CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TRE_0001899601
(
Trichobilharzia regenti
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
TRE_0001899601
T337215_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
TRE_0001899601-mRNA-1
Sox
21
73
PKRSPGPYALFVQSRKRLYRGKFSEFSKSCSREWRQLSNEEREKFKTRALKQS
Links
Other
Sox
family TFs
Other
Trichobilharzia regenti
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
HPBE_0002300401
Heligmosomoides bakeri
HPBE_0002300401
N
0.446
NBR_0000051501
Nippostrongylus brasiliensis
NBR_0000051501
N
0.446
SNAPOd2T00002710001
Oikopleura dioica
SNAPOd2T00002710001
I
0.439
PEQ_0000291001
Parascaris equorum
PEQ_0000291001
I
0.438
ISCW005293
Ixodes scapularis
ISCW005293
N
0.433
Ocbimv22010533m.g
Octopus bimaculoides
Ocbimv22010533m.g
N
0.428
est_cluster_kg.Chr_07__66__3199198:1
Micromonas sp RCC299
est_cluster_kg.Chr_07__66__3199198:1
N
0.422
GPUH_0000691201
Gongylonema pulchrum
GPUH_0000691201
N
0.417
GPUH_0001196001
Gongylonema pulchrum
GPUH_0001196001
N
0.417
EuGene.0000010567
Micromonas pusilla
EuGene.0000010567
N
0.416