CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh_scip_prom.28083.6999
(
Phytophthora lateralis
)
TBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00352 (TBP)
IPR000814
fgenesh_scip_prom.28083.6999
T342549_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh_scip_prom.28083.6999
TBP
16
98
ELHIKNYVCSANLGMRFDLTNLLVKSHRRAELVPKKNCILMKLHNPKATAMLFANGKLVCTGAETEEAIKNVARRFTQVIQKM
fgenesh_scip_prom.28083.6999
TBP
107
186
DFKIQNVVGTCDLGFRVLVEALAFAYSDCCTYEPELYPALIYRLENPQVKVLVFVSGKVVFTDSKEPRELYAACEAIFPL
Links
Other
TBP
family TFs
Other
Phytophthora lateralis
TFs
11 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Phyra84970
Phytophthora ramorum
Phyra84970
N
0.969
Physo129327
Phytophthora sojae
Physo129327
N
0.951
F443_17630
Phytophthora parasitica
F443_17630
N
0.940
PITG_12304
Phytophthora infestans
PITG_12304
N
0.928
estExt_fgenesh1_pg.C_110148
Phytophthora capsici
estExt_fgenesh1_pg.C_110148
N
0.922
HpaG807837
Hyaloperonospora arabidopsidis
HpaG807837
N
0.859
maker-pir_contig_233-fgenesh-gene-0.3
Pythium irregulare
maker-pir_contig_233-fgenesh-gene-0.3
N
0.822
PYU1_G010143
Pythium ultimum
PYU1_G010143
N
0.810
maker-piw_contig_55-fgenesh-gene-0.12
Pythium iwayamai
maker-piw_contig_55-fgenesh-gene-0.12
N
0.777
maker-pve_contig_691-snap-gene-0.13
Pythium vexans
maker-pve_contig_691-snap-gene-0.13
N
0.767
fgenesh_scip_prom.46568.971
Phytophthora kernoviae
fgenesh_scip_prom.46568.971
N
0.706