Pm025349 (Prunus mume)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 Pm025349 T343085_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPT15
M01567_2.00
Saccharomyces cerevisiae
NNDWDAW

WTHWHNN
PBM
Zhu et al.(2009)
Spt15
0.798 0.798
SPT15
M08609_2.00
Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB

VNHNNGNWATATATAWDVVNN
Misc
DeBoer et al.(2011)
YER148W_798
0.798 0.798
SPT15
M11393_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$TBP_Q6
0.798 0.798
Tbp
M00216_2.00
Mus musculus
NWWWWAW

WTWWWWN
PBM
Badis et al.(2009)
Tbp_pr781
0.782 0.782
TBP
M08231_2.00
Homo sapiens
YATTTGCATD

HATGCAAATR
ChIP-seq
Contrino et al.(2012)
Mv129
0.782 0.782
TBP
M09432_2.00
Homo sapiens
MTATAWAWRS

SYWTWTATAK
Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A
0.782 0.782
Tbp
M09433_2.00
Mus musculus
VTATAAAARS

SYTTTTATAB
Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A
0.782 0.782
TBP
M11388_2.00
Homo sapiens
VTATAWAWRVVNNNN

NNNNBBYWTWTATAB
Transfac
Matys et al.(2006)
V$TATA_01
0.782 0.782
TBP
M11389_2.00
Homo sapiens
NCYWTAAAAD

HTTTTAWRGN
Transfac
Matys et al.(2006)
V$TATA_C
0.782 0.782
TBP
M11390_2.00
Homo sapiens
KATAAATW

WATTTATM
Transfac
Matys et al.(2006)
V$TBP_01
0.782 0.782
TBP
M11391_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6_01
0.782 0.782
TBP
M11392_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6
0.782 0.782
TBP
M11491_2.00
Homo sapiens
VTATAWAWRVVNNNN

NNNNBBYWTWTATAB
Unknown
Mathelier et al.(2014)
MA0108.2
0.782 0.782
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm025349 TBP 23 98
Pm025349 TBP 96 143

Links

Other TBP family TFs
Other Prunus mume TFs

194 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CAOG_06656 Capsaspora owczarzaki CAOG_06656 I 0.710
CIMG_11148 Coccidioides immitis CIMG_11148 I 0.798
CPAG_04505 Candida parapsilosis CPAG_04505 I 0.790
RO3G_16620 Rhizopus oryzae RO3G_16620 I 0.798
A1Q1_08290 Trichosporon asahii A1Q1_08290 I 0.758
ACEP14716 Atta cephalotes ACEP14716 I 0.758
AGABI2DRAFT_44722 Agaricus bisporus AGABI2DRAFT_44722 I 0.774
AMTR_s00047p00131170 Amborella trichopoda AMTR_s00047p00131170 I
AMTR_s00064p00125250 Amborella trichopoda AMTR_s00064p00125250 I
Aqu1.225918 Amphimedon queenslandica Aqu1.225918 I 0.750
BDDG_03170 Blastomyces dermatitidis BDDG_03170 I 0.798
BGIOSGA013244 Oryza indica BGIOSGA013244 I 0.815
BGIOSGA031868 Oryza indica BGIOSGA031868 I 0.831
BGIOSGA037671 Oryza indica BGIOSGA037671 I
BN946_scf185000.g31 Trametes cinnabarina BN946_scf185000.g31 I 0.774
Bo2g007300 Brassica oleracea Bo2g007300 I 0.790
Bra028725 Brassica rapa Bra028725 I 0.790
BRADI1G13220 Brachypodium distachyon BRADI1G13220 I
BRADI4G01150 Brachypodium distachyon BRADI4G01150 I
CBG09138 Caenorhabditis briggsae CBG09138 I 0.758
CJA15284 Caenorhabditis japonica CJA15284 I 0.758
CMQ_1115 Grosmannia clavigera CMQ_1115 I 0.782
CORT_0A11870 Candida orthopsilosis CORT_0A11870 I 0.790
CPC735_006990 Coccidioides posadasii CPC735_006990 I 0.798
CRE07760 Caenorhabditis remanei CRE07760 I 0.758
DACRYDRAFT_75233 Dacryopinax sp DACRYDRAFT_75233 I 0.782
DAPPUDRAFT_194512 Daphnia pulex DAPPUDRAFT_194512 I 0.782
DI09_319p10 Microsporidia sp DI09_319p10 I 0.782
EFV53163 Trichinella spiralis EFV53163 I 0.798
ENSAPLG00000006951 Anas platyrhynchos ENSAPLG00000006951 I 0.766
TBPL2 Canis familiaris ENSCAFG00000015052 I 0.766
TBPL2 Cavia porcellus ENSCPOG00000006151 I 0.774
ENSECAG00000008702 Equus caballus ENSECAG00000008702 I 0.734
TBPL2 Erinaceus europaeus ENSEEUG00000008616 I 0.718
TBPL2 Gallus gallus ENSGALG00000012145 I 0.774
TBPL2 Gorilla gorilla ENSGGOG00000001055 I 0.750
TBPL2 Meleagris gallopavo ENSMGAG00000013657 I 0.774
TBPL2 Microcebus murinus ENSMICG00000000943 I 0.758
ENSOANG00000022637 Ornithorhynchus anatinus ENSOANG00000022637 I
ENSOARG00000015944 Ovis aries ENSOARG00000015944 I 0.718
tbp Oryzias latipes ENSORLG00000010757 I 0.766
ENSPMAG00000006175 Petromyzon marinus ENSPMAG00000006175 I 0.774
EURHEDRAFT_409588 Aspergillus ruber EURHEDRAFT_409588 I
F775_26235 Aegilops tauschii F775_26235 I
F775_26897 Aegilops tauschii F775_26897 I
GI18943 Drosophila mojavensis FBgn0141682 I 0.774
TBP2 Arabidopsis lyrata fgenesh2_kg.1__4564__AT1G55520.2 I 0.839
FIBRA_07233 Fibroporia radiculosa FIBRA_07233 I 0.774
FOMPIDRAFT_1017649 Fomitopsis pinicola FOMPIDRAFT_1017649 I 0.774
GALMADRAFT_264138 Galerina marginata GALMADRAFT_264138 I 0.774
GB47180 Apis mellifera GB47180 I 0.766
GLOINDRAFT_79885 Rhizophagus irregularis GLOINDRAFT_79885 I 0.766
GLYMA03G04500 Glycine max GLYMA03G04500 I
GLYMA09G41330 Glycine max GLYMA09G41330 I
GLYMA16G25450 Glycine max GLYMA16G25450 I
GLYMA18G44460 Glycine max GLYMA18G44460 I
GLYMA19G28780 Glycine max GLYMA19G28780 I
GRMZM2G149238 Zea mays GRMZM2G149238 I 0.847
GRMZM2G161418 Zea mays GRMZM2G161418 I 0.815
GRMZM2G466938 Zea mays GRMZM2G466938 I
GSMUA_Achr7G01480_001 Musa acuminata GSMUA_Achr7G01480_001 I
GYMLUDRAFT_48721 Gymnopus luxurians GYMLUDRAFT_48721 I
H101_08207 Trichophyton interdigitale H101_08207 I 0.782
H102_07668 Trichophyton rubrum H102_07668 I 0.798
H105_07693 Trichophyton soudanense H105_07693 I 0.798
H311_04080 Anncaliia algerae H311_04080 I 0.782
HCBG_06828 Histoplasma capsulatum HCBG_06828 I 0.798
HETIRDRAFT_242765 Heterobasidion irregulare HETIRDRAFT_242765 I 0.774
HMEL016424 Heliconius melpomene HMEL016424 I 0.766
J056_000874 Wallemia ichthyophaga J056_000874 I 0.782
K437DRAFT_258899 Tilletiaria anomala K437DRAFT_258899 I 0.750
KGM_04261 Danaus plexippus KGM_04261 I 0.766
LELG_01062 Lodderomyces elongisporus LELG_01062 I 0.790
LPERR12G14180 Leersia perrieri LPERR12G14180 I
M378DRAFT_176716 Amanita muscaria M378DRAFT_176716 I 0.774
M404DRAFT_1000909 Pisolithus tinctorius M404DRAFT_1000909 I
M408DRAFT_329006 Serendipita vermifera M408DRAFT_329006 I
M413DRAFT_438675 Hebeloma cylindrosporum M413DRAFT_438675 I
M438DRAFT_342525 Aureobasidium pullulans M438DRAFT_342525 I
MCINX007129 Melitaea cinxia MCINX007129 I 0.766
MCYG_00725 Arthroderma otae MCYG_00725 I 0.798
MGYG_01238 Microsporum gypseum MGYG_01238 I 0.798
ML03273a Mnemiopsis leidyi ML03273a I 0.790
MLOC_37365 Hordeum vulgare MLOC_37365 I 0.806
MLOC_44969 Hordeum vulgare MLOC_44969 I
Moror_8271 Moniliophthora roreri Moror_8271 I 0.774
MTR_7g072580 Medicago truncatula MTR_7g072580 I
MVLG_00350 Microbotryum violaceum MVLG_00350 I 0.774
NAPIS_ORF00497 Nosema apis NAPIS_ORF00497 I 0.758
NAPIS_ORF00498 Nosema apis NAPIS_ORF00498 I
NAPIS_ORF01257 Nosema apis NAPIS_ORF01257 I
NAPIS_ORF01258 Nosema apis NAPIS_ORF01258 I 0.758
NBO_6g0091 Nosema bombycis NBO_6g0091 I
OB03G33300 Oryza brachyantha OB03G33300 I
OB03G33310 Oryza brachyantha OB03G33310 I
OBART03G28150 Oryza barthii OBART03G28150 I
OBART12G16890 Oryza barthii OBART12G16890 I
OGLUM03G28780 Oryza glumaepatula OGLUM03G28780 I
OGLUM12G18540 Oryza glumaepatula OGLUM12G18540 I
OLONG_006902 Oryza longistaminata OLONG_006902 I
OLONG_010453 Oryza longistaminata OLONG_010453 I
OLONG_012094 Oryza longistaminata OLONG_012094 I
OMERI03G24790 Oryza meridionalis OMERI03G24790 I
OMERI10G08240 Oryza meridionalis OMERI10G08240 I 0.831
OMERI11G15350 Oryza meridionalis OMERI11G15350 I
ONIVA01G08510 Oryza nivara ONIVA01G08510 I 0.831
ONIVA03G29180 Oryza nivara ONIVA03G29180 I
ONIVA12G15220 Oryza nivara ONIVA12G15220 I
OPUNC01G04710 Oryza punctata OPUNC01G04710 I
OPUNC03G21560 Oryza punctata OPUNC03G21560 I
OPUNC03G25660 Oryza punctata OPUNC03G25660 I
OPUNC12G15370 Oryza punctata OPUNC12G15370 I
ORGLA03G0260300 Oryza glaberrima ORGLA03G0260300 I
ORGLA06G0285000 Oryza glaberrima ORGLA06G0285000 I
ORGLA10G0095800 Oryza glaberrima ORGLA10G0095800 I 0.831
ORGLA12G0202200 Oryza glaberrima ORGLA12G0202200 I
ORUFI03G29280 Oryza rufipogon ORUFI03G29280 I 0.815
ORUFI10G11330 Oryza rufipogon ORUFI10G11330 I 0.831
ORUFI12G18750 Oryza rufipogon ORUFI12G18750 I
TBP2 Oryza sativa OS03G0657000 I
OS10G0432300 Oryza sativa OS10G0432300 I 0.831
OS12G0580300 Oryza sativa OS12G0580300 I
PDE_04702 Penicillium oxalicum PDE_04702 I 0.798
PHACADRAFT_256913 Phanerochaete carnosa PHACADRAFT_256913 I 0.774
PHLGIDRAFT_111859 Phlebiopsis gigantea PHLGIDRAFT_111859 I 0.774
PHUM533080 Pediculus humanus PHUM533080 I 0.774
PICST_38880 Scheffersomyces stipitis PICST_38880 I 0.798
PIIN_00750 Piriformospora indica PIIN_00750 I 0.758
PILCRDRAFT_51869 Piloderma croceum PILCRDRAFT_51869 I 0.774
PISMIDRAFT_684343 Pisolithus microcarpus PISMIDRAFT_684343 I 0.766
POPTR_0013s05580 Populus trichocarpa POPTR_0013s05580 I
POPTR_0019s04890 Populus trichocarpa POPTR_0019s04890 I 0.863
PPA00840 Pristionchus pacificus PPA00840 I 0.766
PRUPE_ppa011711mg Prunus persica PRUPE_ppa011711mg I
PV04_08198 Capronia semiimmersa PV04_08198 I 0.790
PV05_09095 Exophiala xenobiotica PV05_09095 I 0.790
PV06_02313 Exophiala oligosperma PV06_02313 I 0.790
PV07_11953 Cladophialophora immunda PV07_11953 I 0.790
PV09_01314 Verruconis gallopava PV09_01314 I 0.774
PV10_01351 Exophiala mesophila PV10_01351 I 0.798
PV11_06323 Exophiala sideris PV11_06323 I 0.790
RHTO_08020 Rhodosporidium toruloides RHTO_08020 I 0.766
Sb01g012880 Sorghum bicolor Sb01g012880 I
Sb01g017130 Sorghum bicolor Sb01g017130 I 0.750
Sb08g022273 Sorghum bicolor Sb08g022273 I 0.847
SCLCIDRAFT_144717 Scleroderma citrinum SCLCIDRAFT_144717 I 0.766
SELMODRAFT_16705 Selaginella moellendorffii SELMODRAFT_16705 I 0.790
SELMODRAFT_37142 Selaginella moellendorffii SELMODRAFT_37142 I 0.790
SERLA73DRAFT_76226 Serpula lacrymans SERLA73DRAFT_76226 I 0.774
Si023295m.g Setaria italica Si023295m.g I 0.847
Si038805m.g Setaria italica Si038805m.g I
SKUD_163604 Saccharomyces kudriavzevii SKUD_163604 I 0.790
SOCG_04191 Schizosaccharomyces octosporus SOCG_04191 I 0.766
tbp1 Schizosaccharomyces pombe SPAC29E6.08 I 0.766
SPAPADRAFT_58486 Spathaspora passalidarum SPAPADRAFT_58486 I 0.790
SPBR_06113 Sporothrix brasiliensis SPBR_06113 I 0.750
SPBR_07999 Sporothrix brasiliensis SPBR_07999 I
SPOG_00351 Schizosaccharomyces cryophilus SPOG_00351 I 0.766
SU7_0942 Saccharomyces arboricola SU7_0942 I 0.790
TC008403 Tribolium castaneum TC008403 I 0.774
TCM_026453 Theobroma cacao TCM_026453 I
TESG_08364 Trichophyton tonsurans TESG_08364 I 0.798
THOM_0429 Trachipleistophora hominis THOM_0429 I 0.758
Traes_4AL_D48452758 Triticum aestivum Traes_4AL_D48452758 I 0.823
Traes_4BS_4F52653D8 Triticum aestivum Traes_4BS_4F52653D8 I
Traes_4DS_700213C0B Triticum aestivum Traes_4DS_700213C0B I
Traes_5AS_03EE89960 Triticum aestivum Traes_5AS_03EE89960 I
Traes_5BS_AD70A5AF7 Triticum aestivum Traes_5BS_AD70A5AF7 I
TriadG22173 Trichoplax adhaerens TriadG22173 I
TriadG50358 Trichoplax adhaerens TriadG50358 I 0.766
TRIUR3_20012 Triticum urartu TRIUR3_20012 I
TRV_02367 Trichophyton verrucosum TRV_02367 I 0.798
UCREL1_11678 Eutypa lata UCREL1_11678 I 0.790
UREG_07344 Uncinocarpus reesii UREG_07344 I
VCUG_02118 Vavraia culicis VCUG_02118 I 0.758
WALSEDRAFT_33220 Wallemia sebi WALSEDRAFT_33220 I 0.782
Z517_03367 Fonsecaea pedrosoi Z517_03367 I 0.790
Aan_R001616 Calypte anna Aan_R001616 I 0.750
Cflo_04179--XP_623088.1_APIME Camponotus floridanus Cflo_04179--XP_623088.1_APIME I 0.758
Cla011298 Citrullus lanatus Cla011298 I
Myotis_brandtii_TBPL2_10011178 Myotis brandtii Myotis_brandtii_TBPL2_10011178 I 0.734
Pm000066 Prunus mume Pm000066 I 0.839
Tal_R008176 Tyto alba Tal_R008176 I 0.774
29950.m001154 Ricinus communis 29950.m001154 I
cassava22625.valid.m1 Manihot esculenta cassava22625.valid.m1 I
cassava35684.valid.m1 Manihot esculenta cassava35684.valid.m1 I
Cucsa.142180 Cucumis sativus Cucsa.142180 I
e_gw1.11.176.1 Naegleria gruberi e_gw1.11.176.1 I 0.718
e_gw1.11.241.1 Mucor circinelloides e_gw1.11.241.1 I 0.790
e_gw1.1.2234.1 Mucor circinelloides e_gw1.1.2234.1 I 0.790
e_gwh1.1.1.994.1 Pichia stipitis e_gwh1.1.1.994.1 I 0.798
fgeneshPB_pg.12__294 Phycomyces blakesleeanus fgeneshPB_pg.12__294 I 0.790
gwh2.1.1035.1 Phanerochaete chrysosporium gwh2.1.1035.1 I 0.774
mgf009543m Mimulus guttatus mgf009543m I 0.855
mgf012063m Mimulus guttatus mgf012063m I
Aquca_037_00296 Aquilegia coerulea Aquca_037_00296 I
Aquca_124_00015 Aquilegia coerulea Aquca_124_00015 I 0.726
Bostr.3640s0136 Boechera stricta Bostr.3640s0136 I 0.831
Cagra.0001s0028 Capsella grandiflora Cagra.0001s0028 I 0.847
Carubv10010337m.g Capsella rubella Carubv10010337m.g I 0.847
Ciclev10022324m.g Citrus clementina Ciclev10022324m.g I
Eucgr.J01752 Eucalyptus grandis Eucgr.J01752 I 0.700
Gorai.004G244700 Gossypium raimondii Gorai.004G244700 I 0.831
Gorai.007G288000 Gossypium raimondii Gorai.007G288000 I
Gorai.013G202900 Gossypium raimondii Gorai.013G202900 I 0.863
Lus10031531.g Linum usitatissimum Lus10031531.g I 0.758
orange1.1g029591m.g Citrus sinensis orange1.1g029591m.g I 0.823
Pavir.Ib03379 Panicum virgatum Pavir.Ib03379 I 0.806
Pavir.Ib04166 Panicum virgatum Pavir.Ib04166 I
Pavir.J26398 Panicum virgatum Pavir.J26398 I
SapurV1A.0308s0180 Salix purpurea SapurV1A.0308s0180 I 0.855
SapurV1A.0680s0010 Salix purpurea SapurV1A.0680s0010 I
Thhalv10022351m.g Eutrema salsugineum Thhalv10022351m.g I 0.782
Contig262.1.g32 Oxytricha trifallax Contig262.1.g32 I 0.710
HHAL004028-PA Halyomorpha halys HHAL004028-PA I 0.774
PK11932.1 Cannabis sativa PK11932.1 I
PK25605.1 Cannabis sativa PK25605.1 I
SMU15013179 Schmidtea mediterranea SMU15013179 I 0.758
tbpl2.L Xenopus laevis XB-GENE-876147 I 0.774
AB04989.1 Alternaria brassicicola AB04989.1 I
chr1.LjT45A19.110.nd Lotus japonicus chr1.LjT45A19.110.nd I
estExt_fgenesh3_kg.C_20416 Heterobasidion annosum estExt_fgenesh3_kg.C_20416 I 0.774
LjSGA_031793.1 Lotus japonicus LjSGA_031793.1 I 0.758
LjT45I18.100.nd Lotus japonicus LjT45I18.100.nd I
PDK_20s1328661g002 Phoenix dactylifera PDK_20s1328661g002 I
PDK_20s1536561g001 Phoenix dactylifera PDK_20s1536561g001 I
PDK_20s1715251g002 Phoenix dactylifera PDK_20s1715251g002 I
ANCDUO_13676 Ancylostoma duodenale ANCDUO_13676 I
D917_07868 Trichinella nativa D917_07868 I 0.798
DME_0000305201 Dracunculus medinensis DME_0000305201 I 0.758
HmN_000119900 Hymenolepis microstoma HmN_000119900 I 0.734
HNAJ_0000219201 Hymenolepis nana HNAJ_0000219201 I 0.734
L596_g25394 Steinernema carpocapsae L596_g25394 I 0.758
L898_g32593 Steinernema monticolum L898_g32593 I 0.750
RSKR_0000436900 Rhabditophanes kr3021 RSKR_0000436900 I 0.766
MTR_3g065900 Medicago truncatula MTR_3g065900 N
gene04978-v1.0-hybrid Fragaria vesca gene04978-v1.0-hybrid N