CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pm025349
(
Prunus mume
)
TBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00352 (TBP)
IPR000814
Pm025349
T343085_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPT15
M01567_2.00
Saccharomyces cerevisiae
NNDWDAW
WTHWHNN
PBM
Zhu et al.(2009)
Spt15
0.798
0.798
SPT15
M08609_2.00
Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN
Misc
DeBoer et al.(2011)
YER148W_798
0.798
0.798
SPT15
M11393_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$TBP_Q6
0.798
0.798
Tbp
M00216_2.00
Mus musculus
NWWWWAW
WTWWWWN
PBM
Badis et al.(2009)
Tbp_pr781
0.782
0.782
TBP
M08231_2.00
Homo sapiens
YATTTGCATD
HATGCAAATR
ChIP-seq
Contrino et al.(2012)
Mv129
0.782
0.782
TBP
M09432_2.00
Homo sapiens
MTATAWAWRS
SYWTWTATAK
Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A
0.782
0.782
Tbp
M09433_2.00
Mus musculus
VTATAAAARS
SYTTTTATAB
Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A
0.782
0.782
TBP
M11388_2.00
Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB
Transfac
Matys et al.(2006)
V$TATA_01
0.782
0.782
TBP
M11389_2.00
Homo sapiens
NCYWTAAAAD
HTTTTAWRGN
Transfac
Matys et al.(2006)
V$TATA_C
0.782
0.782
TBP
M11390_2.00
Homo sapiens
KATAAATW
WATTTATM
Transfac
Matys et al.(2006)
V$TBP_01
0.782
0.782
TBP
M11391_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6_01
0.782
0.782
TBP
M11392_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6
0.782
0.782
TBP
M11491_2.00
Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB
Unknown
Mathelier et al.(2014)
MA0108.2
0.782
0.782
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pm025349
TBP
23
98
VPTLQNIVSTVYLGCRLDLKQIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKY
Pm025349
TBP
96
143
RKYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKLHQKSNNNRTVI
Links
Other
TBP
family TFs
Other
Prunus mume
TFs
194 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AGABI2DRAFT_44722
Agaricus bisporus
AGABI2DRAFT_44722
I
0.774
Alligator_sinensis_CCG004402.1
Alligator sinensis
Alligator_sinensis_CCG004402.1
I
0.750
M378DRAFT_176716
Amanita muscaria
M378DRAFT_176716
I
0.774
Aqu1.225918
Amphimedon queenslandica
Aqu1.225918
I
0.750
ENSAPLG00000006951
Anas platyrhynchos
ENSAPLG00000006951
I
0.766
H311_04080
Anncaliia algerae
H311_04080
I
0.782
GB47180
Apis mellifera
GB47180
I
0.766
Aquca_013_00902
Aquilegia coerulea
Aquca_013_00902
I
0.798
Aquca_124_00015
Aquilegia coerulea
Aquca_124_00015
I
0.726
TBP2
Arabidopsis lyrata
fgenesh2_kg.1__4564__AT1G55520.2
I
0.839
TBP2
Arabidopsis thaliana
AT1G55520
I
0.839
MCYG_00725
Arthroderma otae
MCYG_00725
I
0.798
ENSAMXG00000003582
Astyanax mexicanus
ENSAMXG00000003582
I
0.782
ACEP14716
Atta cephalotes
ACEP14716
I
0.758
BDDG_03170
Blastomyces dermatitidis
BDDG_03170
I
0.798
Bostr.3640s0136
Boechera stricta
Bostr.3640s0136
I
0.831
Bostr.6758s0027
Boechera stricta
Bostr.6758s0027
I
0.847
ENSBTAG00000046809
Bos taurus
ENSBTAG00000046809
I
0.742
Bo2g007300
Brassica oleracea
Bo2g007300
I
0.790
Bo3g185290
Brassica oleracea
Bo3g185290
I
0.839
Bo6g051360
Brassica oleracea
Bo6g051360
I
0.847
Bra028725
Brassica rapa
Bra028725
I
0.790
Bra030855
Brassica rapa
Bra030855
I
0.839
CBG09138
Caenorhabditis briggsae
CBG09138
I
0.758
CJA15284
Caenorhabditis japonica
CJA15284
I
0.758
CRE07760
Caenorhabditis remanei
CRE07760
I
0.758
Aan_R001616
Calypte anna
Aan_R001616
I
0.750
Cflo_04179--XP_623088.1_APIME
Camponotus floridanus
Cflo_04179--XP_623088.1_APIME
I
0.758
CORT_0A11870
Candida orthopsilosis
CORT_0A11870
I
0.790
CPAG_04505
Candida parapsilosis
CPAG_04505
I
0.790
TBPL2
Canis familiaris
ENSCAFG00000015052
I
0.766
PV04_08198
Capronia semiimmersa
PV04_08198
I
0.790
CAOG_06656
Capsaspora owczarzaki
CAOG_06656
I
0.710
Cagra.0001s0028
Capsella grandiflora
Cagra.0001s0028
I
0.847
Carubv10010337m.g
Capsella rubella
Carubv10010337m.g
I
0.847
TBPL2
Cavia porcellus
ENSCPOG00000006151
I
0.774
CHLREDRAFT_144556
Chlamydomonas reinhardtii
CHLREDRAFT_144556
I
0.758
orange1.1g029591m.g
Citrus sinensis
orange1.1g029591m.g
I
0.823
PV07_11953
Cladophialophora immunda
PV07_11953
I
0.790
csin110354
Clonorchis sinensis
csin110354
I
0.774
CIMG_11148
Coccidioides immitis
CIMG_11148
I
0.798
CPC735_006990
Coccidioides posadasii
CPC735_006990
I
0.798
L804_06395
Cryptococcus gattii
L804_06395
I
0.742
CNH01090
Cryptococcus neoformans
CNH01090
I
0.742
DACRYDRAFT_75233
Dacryopinax sp
DACRYDRAFT_75233
I
0.782
KGM_04261
Danaus plexippus
KGM_04261
I
0.766
tbp
Danio rerio
ENSDARG00000014994
I
0.782
DAPPUDRAFT_194512
Daphnia pulex
DAPPUDRAFT_194512
I
0.782
ATG14
Dasypus novemcinctus
ENSDNOG00000015108
I
0.766
DME_0000305201
Dracunculus medinensis
DME_0000305201
I
0.758
GI18943
Drosophila mojavensis
FBgn0141682
I
0.774
EBI_26482
Enterocytozoon bieneusi
EBI_26482
I
0.726
ENSECAG00000008702
Equus caballus
ENSECAG00000008702
I
0.734
TBPL2
Erinaceus europaeus
ENSEEUG00000008616
I
0.718
Eucgr.J01752
Eucalyptus grandis
Eucgr.J01752
I
0.700
Thhalv10022351m.g
Eutrema salsugineum
Thhalv10022351m.g
I
0.782
UCREL1_11678
Eutypa lata
UCREL1_11678
I
0.790
PV10_01351
Exophiala mesophila
PV10_01351
I
0.798
PV06_02313
Exophiala oligosperma
PV06_02313
I
0.790
PV11_06323
Exophiala sideris
PV11_06323
I
0.790
PV05_09095
Exophiala xenobiotica
PV05_09095
I
0.790
FIBRA_07233
Fibroporia radiculosa
FIBRA_07233
I
0.774
FOMPIDRAFT_1017649
Fomitopsis pinicola
FOMPIDRAFT_1017649
I
0.774
Z517_03367
Fonsecaea pedrosoi
Z517_03367
I
0.790
ENSGMOG00000012435
Gadus morhua
ENSGMOG00000012435
I
0.782
GALMADRAFT_264138
Galerina marginata
GALMADRAFT_264138
I
0.774
TBPL2
Gallus gallus
ENSGALG00000012145
I
0.774
tbp
Gasterosteus aculeatus
ENSGACG00000016147
I
0.782
TBPL2
Gorilla gorilla
ENSGGOG00000001055
I
0.750
Gorai.004G244700
Gossypium raimondii
Gorai.004G244700
I
0.831
Gorai.013G202900
Gossypium raimondii
Gorai.013G202900
I
0.863
CMQ_1115
Grosmannia clavigera
CMQ_1115
I
0.782
CMQ_6369
Grosmannia clavigera
CMQ_6369
I
0.750
HHAL004028-PA
Halyomorpha halys
HHAL004028-PA
I
0.774
HMEL016424
Heliconius melpomene
HMEL016424
I
0.766
estExt_fgenesh3_kg.C_20416
Heterobasidion annosum
estExt_fgenesh3_kg.C_20416
I
0.774
HETIRDRAFT_242765
Heterobasidion irregulare
HETIRDRAFT_242765
I
0.774
HCBG_06828
Histoplasma capsulatum
HCBG_06828
I
0.798
MLOC_37365
Hordeum vulgare
MLOC_37365
I
0.806
HmN_000119900
Hymenolepis microstoma
HmN_000119900
I
0.734
HNAJ_0000219201
Hymenolepis nana
HNAJ_0000219201
I
0.734
LPERR10G07850
Leersia perrieri
LPERR10G07850
I
0.839
Lus10031531.g
Linum usitatissimum
Lus10031531.g
I
0.758
LELG_01062
Lodderomyces elongisporus
LELG_01062
I
0.790
LotgiG129673
Lottia gigantea
LotgiG129673
I
0.734
LjSGA_031793.1
Lotus japonicus
LjSGA_031793.1
I
0.758
LLOJ006615
Lutzomyia longipalpis
LLOJ006615
I
0.766
MDP0000289755
Malus domestica
MDP0000289755
I
0.855
MTR_4g029010
Medicago truncatula
MTR_4g029010
I
0.839
TBPL2
Meleagris gallopavo
ENSMGAG00000013657
I
0.774
MCINX007129
Melitaea cinxia
MCINX007129
I
0.766
MVLG_00350
Microbotryum violaceum
MVLG_00350
I
0.774
TBPL2
Microcebus murinus
ENSMICG00000000943
I
0.758
DI09_319p10
Microsporidia sp
DI09_319p10
I
0.782
MGYG_01238
Microsporum gypseum
MGYG_01238
I
0.798
mgf009543m
Mimulus guttatus
mgf009543m
I
0.855
ML03273a
Mnemiopsis leidyi
ML03273a
I
0.790
Moror_8271
Moniliophthora roreri
Moror_8271
I
0.774
e_gw1.11.241.1
Mucor circinelloides
e_gw1.11.241.1
I
0.790
e_gw1.1.2234.1
Mucor circinelloides
e_gw1.1.2234.1
I
0.790
Tbp
Mus musculus
ENSMUSG00000014767
D
0.721
Myotis_brandtii_TBPL2_10011178
Myotis brandtii
Myotis_brandtii_TBPL2_10011178
I
0.734
e_gw1.11.176.1
Naegleria gruberi
e_gw1.11.176.1
I
0.718
NAPIS_ORF00497
Nosema apis
NAPIS_ORF00497
I
0.758
NAPIS_ORF01258
Nosema apis
NAPIS_ORF01258
I
0.758
T265_13707
Opisthorchis viverrini
T265_13707
I
0.774
ENSONIG00000017061
Oreochromis niloticus
ENSONIG00000017061
I
0.782
ORGLA10G0095800
Oryza glaberrima
ORGLA10G0095800
I
0.831
BGIOSGA013244
Oryza indica
BGIOSGA013244
I
0.815
BGIOSGA031868
Oryza indica
BGIOSGA031868
I
0.831
OMERI10G08240
Oryza meridionalis
OMERI10G08240
I
0.831
ONIVA01G08510
Oryza nivara
ONIVA01G08510
I
0.831
ORUFI03G29280
Oryza rufipogon
ORUFI03G29280
I
0.815
ORUFI10G11330
Oryza rufipogon
ORUFI10G11330
I
0.831
OS10G0432300
Oryza sativa
OS10G0432300
I
0.831
tbp
Oryzias latipes
ENSORLG00000010757
I
0.766
ENSOARG00000015944
Ovis aries
ENSOARG00000015944
I
0.718
Contig262.1.g32
Oxytricha trifallax
Contig262.1.g32
I
0.710
Pavir.Ib03379
Panicum virgatum
Pavir.Ib03379
I
0.806
PHUM533080
Pediculus humanus
PHUM533080
I
0.774
PDE_04702
Penicillium oxalicum
PDE_04702
I
0.798
ENSPMAG00000006175
Petromyzon marinus
ENSPMAG00000006175
I
0.774
PHACADRAFT_256913
Phanerochaete carnosa
PHACADRAFT_256913
I
0.774
gwh2.1.1035.1
Phanerochaete chrysosporium
gwh2.1.1035.1
I
0.774
PHLGIDRAFT_111859
Phlebiopsis gigantea
PHLGIDRAFT_111859
I
0.774
PPAI004956
Phlebotomus papatasi
PPAI004956
I
0.766
fgeneshPB_pg.12__294
Phycomyces blakesleeanus
fgeneshPB_pg.12__294
I
0.790
e_gwh1.1.1.994.1
Pichia stipitis
e_gwh1.1.1.994.1
I
0.798
PILCRDRAFT_51869
Piloderma croceum
PILCRDRAFT_51869
I
0.774
PIIN_00750
Piriformospora indica
PIIN_00750
I
0.758
PISMIDRAFT_684343
Pisolithus microcarpus
PISMIDRAFT_684343
I
0.766
PredSwiss_ASS2010_1907.1
Pneumocystis carinii
PredSwiss_ASS2010_1907.1
I
0.798
PredSwiss_CON251.1
Pneumocystis carinii
PredSwiss_CON251.1
I
0.790
PredSwiss_EST785.1
Pneumocystis carinii
PredSwiss_EST785.1
I
0.798
PNEG_00724
Pneumocystis murina
PNEG_00724
I
0.798
POPTR_0019s04890
Populus trichocarpa
POPTR_0019s04890
I
0.863
PPA00840
Pristionchus pacificus
PPA00840
I
0.766
Pm000066
Prunus mume
Pm000066
I
0.839
GMDG_00522
Pseudogymnoascus destructans
GMDG_00522
I
0.798
V499_02736
Pseudogymnoascus pannorum
V499_02736
I
0.798
RSKR_0000436900
Rhabditophanes kr3021
RSKR_0000436900
I
0.766
GLOINDRAFT_79885
Rhizophagus irregularis
GLOINDRAFT_79885
I
0.766
RO3G_15549
Rhizopus oryzae
RO3G_15549
I
0.766
RO3G_16620
Rhizopus oryzae
RO3G_16620
I
0.798
RHTO_08020
Rhodosporidium toruloides
RHTO_08020
I
0.766
29822.m003403
Ricinus communis
29822.m003403
I
0.734
SU7_0942
Saccharomyces arboricola
SU7_0942
I
0.790
SKUD_163604
Saccharomyces kudriavzevii
SKUD_163604
I
0.790
SapurV1A.0308s0180
Salix purpurea
SapurV1A.0308s0180
I
0.855
PICST_38880
Scheffersomyces stipitis
PICST_38880
I
0.798
SPOG_00351
Schizosaccharomyces cryophilus
SPOG_00351
I
0.766
SJAG_00421
Schizosaccharomyces japonicus
SJAG_00421
I
0.798
SOCG_04191
Schizosaccharomyces octosporus
SOCG_04191
I
0.766
tbp1
Schizosaccharomyces pombe
SPAC29E6.08
I
0.766
SMU15013179
Schmidtea mediterranea
SMU15013179
I
0.758
SCLCIDRAFT_144717
Scleroderma citrinum
SCLCIDRAFT_144717
I
0.766
SELMODRAFT_16705
Selaginella moellendorffii
SELMODRAFT_16705
I
0.790
SELMODRAFT_37142
Selaginella moellendorffii
SELMODRAFT_37142
I
0.790
SERLA73DRAFT_76226
Serpula lacrymans
SERLA73DRAFT_76226
I
0.774
Si023295m.g
Setaria italica
Si023295m.g
I
0.847
Si039719m.g
Setaria italica
Si039719m.g
I
0.742
SINV24483
Solenopsis invicta
SINV24483
I
0.758
Sb01g017130
Sorghum bicolor
Sb01g017130
I
0.750
Sb08g022273
Sorghum bicolor
Sb08g022273
I
0.847
SPAPADRAFT_58486
Spathaspora passalidarum
SPAPADRAFT_58486
I
0.790
SPBR_06113
Sporothrix brasiliensis
SPBR_06113
I
0.750
L596_g25394
Steinernema carpocapsae
L596_g25394
I
0.758
L889_g25192
Steinernema feltiae
L889_g25192
I
0.758
L898_g32593
Steinernema monticolum
L898_g32593
I
0.750
trf3
Takifugu rubripes
ENSTRUG00000009283
I
0.782
tbpl2
Tetraodon nigroviridis
ENSTNIG00000002597
I
0.782
TCM_001402
Theobroma cacao
TCM_001402
I
0.726
K437DRAFT_258899
Tilletiaria anomala
K437DRAFT_258899
I
0.750
THOM_0429
Trachipleistophora hominis
THOM_0429
I
0.758
BN946_scf185000.g31
Trametes cinnabarina
BN946_scf185000.g31
I
0.774
TC008403
Tribolium castaneum
TC008403
I
0.774
D917_07868
Trichinella nativa
D917_07868
I
0.798
EFV53163
Trichinella spiralis
EFV53163
I
0.798
H101_08207
Trichophyton interdigitale
H101_08207
I
0.782
H102_07668
Trichophyton rubrum
H102_07668
I
0.798
H105_07693
Trichophyton soudanense
H105_07693
I
0.798
TESG_08364
Trichophyton tonsurans
TESG_08364
I
0.798
TRV_02367
Trichophyton verrucosum
TRV_02367
I
0.798
TriadG50358
Trichoplax adhaerens
TriadG50358
I
0.766
A1Q1_08290
Trichosporon asahii
A1Q1_08290
I
0.758
Traes_4AL_D48452758
Triticum aestivum
Traes_4AL_D48452758
I
0.823
Tal_R008176
Tyto alba
Tal_R008176
I
0.774
VCUG_02118
Vavraia culicis
VCUG_02118
I
0.758
PV09_01314
Verruconis gallopava
PV09_01314
I
0.774
J056_000874
Wallemia ichthyophaga
J056_000874
I
0.782
WALSEDRAFT_33220
Wallemia sebi
WALSEDRAFT_33220
I
0.782
tbpl2.L
Xenopus laevis
XB-GENE-876147
I
0.774
GRMZM2G149238
Zea mays
GRMZM2G149238
I
0.847
GRMZM2G161418
Zea mays
GRMZM2G161418
I
0.815