Pavir.J26398 (Panicum virgatum)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 Pavir.J26398 T343189_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.872 0.872
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.872 0.872
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.872 0.872
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.817 0.817
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.817 0.817
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.817 0.817
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.817 0.817
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.817 0.817
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.817 0.817
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.817 0.817
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.817 0.817
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.817 0.817
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.817 0.817
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J26398.1.p TBP 1 25
Pavir.J26398.1.p TBP 33 116

Links

Other TBP family TFs
Other Panicum virgatum TFs

220 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Traes_4AL_D48452758 Triticum aestivum Traes_4AL_D48452758 I 1.000
Pavir.Ib04166 Panicum virgatum Pavir.Ib04166 I 1.000
BGIOSGA013244 Oryza indica BGIOSGA013244 I 0.991
BRADI4G01150 Brachypodium distachyon BRADI4G01150 I 0.991
GRMZM2G161418 Zea mays GRMZM2G161418 I 0.991
ORGLA06G0285000 Oryza glaberrima ORGLA06G0285000 I 0.991
ORUFI03G29280 Oryza rufipogon ORUFI03G29280 I 0.991
MLOC_37365 Hordeum vulgare MLOC_37365 I 0.982
Sb08g022273 Sorghum bicolor Sb08g022273 I 0.982
Si023295m.g Setaria italica Si023295m.g I 0.982
Traes_5AS_03EE89960 Triticum aestivum Traes_5AS_03EE89960 I 0.982
Traes_5BS_AD70A5AF7 Triticum aestivum Traes_5BS_AD70A5AF7 I 0.982
Gorai.004G244700 Gossypium raimondii Gorai.004G244700 I 0.982
orange1.1g029591m.g Citrus sinensis orange1.1g029591m.g I 0.982
SapurV1A.0308s0180 Salix purpurea SapurV1A.0308s0180 I 0.982
PDK_20s1328661g002 Phoenix dactylifera PDK_20s1328661g002 I 0.982
MTR_4g029010 Medicago truncatula MTR_4g029010 I 0.972
POPTR_0019s04890 Populus trichocarpa POPTR_0019s04890 I 0.972
OLONG_010453 Oryza longistaminata OLONG_010453 I 0.971
Aquca_037_00296 Aquilegia coerulea Aquca_037_00296 I 0.964
mgf009543m Mimulus guttatus mgf009543m I 0.963
OPUNC01G04710 Oryza punctata OPUNC01G04710 I 0.951
AMTR_s00047p00131170 Amborella trichopoda AMTR_s00047p00131170 I 0.947
Bo3g185290 Brassica oleracea Bo3g185290 I 0.945
Bo6g051360 Brassica oleracea Bo6g051360 I 0.945
Bra030855 Brassica rapa Bra030855 I 0.945
Bostr.6758s0027 Boechera stricta Bostr.6758s0027 I 0.945
TBP2 Arabidopsis lyrata fgenesh2_kg.1__4564__AT1G55520.2 I 0.936
Pavir.Ib03379 Panicum virgatum Pavir.Ib03379 I 0.936
TBP2 Arabidopsis thaliana AT1G55520 I 0.927
Cagra.0001s0028 Capsella grandiflora Cagra.0001s0028 I 0.927
Carubv10010337m.g Capsella rubella Carubv10010337m.g I 0.927
Pavir.J18057 Panicum virgatum Pavir.J18057 I 0.927
RO3G_15549 Rhizopus oryzae RO3G_15549 I 0.908
BGIOSGA031868 Oryza indica BGIOSGA031868 I 0.908
LPERR10G07850 Leersia perrieri LPERR10G07850 I 0.908
OMERI10G08240 Oryza meridionalis OMERI10G08240 I 0.908
ONIVA01G08510 Oryza nivara ONIVA01G08510 I 0.908
ORGLA10G0095800 Oryza glaberrima ORGLA10G0095800 I 0.908
ORUFI10G11330 Oryza rufipogon ORUFI10G11330 I 0.908
OS10G0432300 Oryza sativa OS10G0432300 I 0.908
e_gw1.11.241.1 Mucor circinelloides e_gw1.11.241.1 I 0.908
e_gw1.1.2234.1 Mucor circinelloides e_gw1.1.2234.1 I 0.908
fgeneshPB_pg.12__294 Phycomyces blakesleeanus fgeneshPB_pg.12__294 I 0.908
Bostr.3640s0136 Boechera stricta Bostr.3640s0136 I 0.908
RO3G_16620 Rhizopus oryzae RO3G_16620 I 0.899
GLOINDRAFT_79885 Rhizophagus irregularis GLOINDRAFT_79885 I 0.899
PNEG_00724 Pneumocystis murina PNEG_00724 I 0.899
SJAG_00421 Schizosaccharomyces japonicus SJAG_00421 I 0.899
PredSwiss_ASS2010_1907.1 Pneumocystis carinii PredSwiss_ASS2010_1907.1 I 0.899
PredSwiss_EST785.1 Pneumocystis carinii PredSwiss_EST785.1 I 0.899
SELMODRAFT_16705 Selaginella moellendorffii SELMODRAFT_16705 I 0.890
SELMODRAFT_37142 Selaginella moellendorffii SELMODRAFT_37142 I 0.890
PredSwiss_CON251.1 Pneumocystis carinii PredSwiss_CON251.1 I 0.890
CPAG_04505 Candida parapsilosis CPAG_04505 I 0.881
CORT_0A11870 Candida orthopsilosis CORT_0A11870 I 0.881
DI09_319p10 Microsporidia sp DI09_319p10 I 0.881
LELG_01062 Lodderomyces elongisporus LELG_01062 I 0.881
PICST_38880 Scheffersomyces stipitis PICST_38880 I 0.881
SPAPADRAFT_58486 Spathaspora passalidarum SPAPADRAFT_58486 I 0.881
e_gwh1.1.1.994.1 Pichia stipitis e_gwh1.1.1.994.1 I 0.881
MDP0000289755 Malus domestica MDP0000289755 I 0.881
Thhalv10022351m.g Eutrema salsugineum Thhalv10022351m.g I 0.881
SKUD_163604 Saccharomyces kudriavzevii SKUD_163604 I 0.872
SOCG_04191 Schizosaccharomyces octosporus SOCG_04191 I 0.872
tbp1 Schizosaccharomyces pombe SPAC29E6.08 I 0.872
SPOG_00351 Schizosaccharomyces cryophilus SPOG_00351 I 0.872
SU7_0942 Saccharomyces arboricola SU7_0942 I 0.872
CIMG_11148 Coccidioides immitis CIMG_11148 I 0.862
CMQ_6369 Grosmannia clavigera CMQ_6369 I 0.862
CPC735_006990 Coccidioides posadasii CPC735_006990 I 0.862
DACRYDRAFT_75233 Dacryopinax sp DACRYDRAFT_75233 I 0.862
H101_08207 Trichophyton interdigitale H101_08207 I 0.862
H102_07668 Trichophyton rubrum H102_07668 I 0.862
H105_07693 Trichophyton soudanense H105_07693 I 0.862
HCBG_06828 Histoplasma capsulatum HCBG_06828 I 0.862
MCYG_00725 Arthroderma otae MCYG_00725 I 0.862
MGYG_01238 Microsporum gypseum MGYG_01238 I 0.862
MVLG_00350 Microbotryum violaceum MVLG_00350 I 0.862
OPUNC03G21560 Oryza punctata OPUNC03G21560 I 0.862
PV04_08198 Capronia semiimmersa PV04_08198 I 0.862
SPBR_07999 Sporothrix brasiliensis SPBR_07999 I 0.862
TESG_08364 Trichophyton tonsurans TESG_08364 I 0.862
Aquca_013_00902 Aquilegia coerulea Aquca_013_00902 I 0.862
A1Q1_08290 Trichosporon asahii A1Q1_08290 I 0.853
AGABI2DRAFT_44722 Agaricus bisporus AGABI2DRAFT_44722 I 0.853
AUEXF2481DRAFT_7161 Aureobasidium subglaciale AUEXF2481DRAFT_7161 I 0.853
BDDG_03170 Blastomyces dermatitidis BDDG_03170 I 0.853
BGHDH14_bgh06421 Blumeria graminis BGHDH14_bgh06421 I 0.853
BN946_scf185000.g31 Trametes cinnabarina BN946_scf185000.g31 I 0.853
FIBRA_07233 Fibroporia radiculosa FIBRA_07233 I 0.853
FOMPIDRAFT_1017649 Fomitopsis pinicola FOMPIDRAFT_1017649 I 0.853
GALMADRAFT_264138 Galerina marginata GALMADRAFT_264138 I 0.853
GMDG_00522 Pseudogymnoascus destructans GMDG_00522 I 0.853
HETIRDRAFT_242765 Heterobasidion irregulare HETIRDRAFT_242765 I 0.853
M378DRAFT_176716 Amanita muscaria M378DRAFT_176716 I 0.853
M437DRAFT_72832 Aureobasidium melanogenum M437DRAFT_72832 I 0.853
M7I_0762 Glarea lozoyensis M7I_0762 I 0.853
MBM_05886 Marssonina brunnea MBM_05886 I 0.853
Moror_8271 Moniliophthora roreri Moror_8271 I 0.853
OIDMADRAFT_53635 Oidiodendron maius OIDMADRAFT_53635 I 0.853
PDE_04702 Penicillium oxalicum PDE_04702 I 0.853
PHACADRAFT_256913 Phanerochaete carnosa PHACADRAFT_256913 I 0.853
PHLGIDRAFT_111859 Phlebiopsis gigantea PHLGIDRAFT_111859 I 0.853
PIIN_00750 Piriformospora indica PIIN_00750 I 0.853
PILCRDRAFT_51869 Piloderma croceum PILCRDRAFT_51869 I 0.853
PISMIDRAFT_684343 Pisolithus microcarpus PISMIDRAFT_684343 I 0.853
PV09_01314 Verruconis gallopava PV09_01314 I 0.853
RHTO_08020 Rhodosporidium toruloides RHTO_08020 I 0.853
SCLCIDRAFT_144717 Scleroderma citrinum SCLCIDRAFT_144717 I 0.853
SERLA73DRAFT_76226 Serpula lacrymans SERLA73DRAFT_76226 I 0.853
TRV_02367 Trichophyton verrucosum TRV_02367 I 0.853
UCREL1_11678 Eutypa lata UCREL1_11678 I 0.853
V499_02736 Pseudogymnoascus pannorum V499_02736 I 0.853
gwh2.1.1035.1 Phanerochaete chrysosporium gwh2.1.1035.1 I 0.853
estExt_fgenesh3_kg.C_20416 Heterobasidion annosum estExt_fgenesh3_kg.C_20416 I 0.853
SNOG_06135 Stagonospora nodorum SNOG_06135 I 0.844
GRMZM2G149238 Zea mays GRMZM2G149238 I 0.844
J056_000874 Wallemia ichthyophaga J056_000874 I 0.844
LEMA_P121430.1 Leptosphaeria maculans LEMA_P121430.1 I 0.844
PV05_09095 Exophiala xenobiotica PV05_09095 I 0.844
PV06_02313 Exophiala oligosperma PV06_02313 I 0.844
PV07_11953 Cladophialophora immunda PV07_11953 I 0.844
PV10_01351 Exophiala mesophila PV10_01351 I 0.844
PV11_06323 Exophiala sideris PV11_06323 I 0.844
SNOG_06135 Phaeosphaeria nodorum SNOG_06135 I 0.844
WALSEDRAFT_33220 Wallemia sebi WALSEDRAFT_33220 I 0.844
Z517_03367 Fonsecaea pedrosoi Z517_03367 I 0.844
A1O5_09235 Cladophialophora psammophila A1O5_09235 I 0.835
A1O9_01972 Exophiala aquamarina A1O9_01972 I 0.835
Bo2g007300 Brassica oleracea Bo2g007300 I 0.835
CMQ_1115 Grosmannia clavigera CMQ_1115 I 0.835
CNH01090 Cryptococcus neoformans CNH01090 I 0.835
L804_06395 Cryptococcus gattii L804_06395 I 0.835
PV08_11625 Exophiala spinifera PV08_11625 I 0.835
SINV24483 Solenopsis invicta SINV24483 I 0.835
Z518_06724 Rhinocladiella mackenziei Z518_06724 I 0.835
Aquca_124_00015 Aquilegia coerulea Aquca_124_00015 I 0.835
Lus10031531.g Linum usitatissimum Lus10031531.g I 0.835
ACEP14716 Atta cephalotes ACEP14716 I 0.826
Bra028725 Brassica rapa Bra028725 I 0.826
GB47180 Apis mellifera GB47180 I 0.826
HMEL016424 Heliconius melpomene HMEL016424 I 0.826
KGM_04261 Danaus plexippus KGM_04261 I 0.826
LotgiG129673 Lottia gigantea LotgiG129673 I 0.826
MCINX007129 Melitaea cinxia MCINX007129 I 0.826
PHUM533080 Pediculus humanus PHUM533080 I 0.826
Cflo_04179--XP_623088.1_APIME Camponotus floridanus Cflo_04179--XP_623088.1_APIME I 0.826
Pm000066 Prunus mume Pm000066 I 0.826
AB04989.1 Alternaria brassicicola AB04989.1 I 0.826
ENSAMXG00000003582 Astyanax mexicanus ENSAMXG00000003582 I 0.817
tbp Danio rerio ENSDARG00000014994 I 0.817
tbp Gasterosteus aculeatus ENSGACG00000016147 I 0.817
ENSGMOG00000012435 Gadus morhua ENSGMOG00000012435 I 0.817
ENSONIG00000017061 Oreochromis niloticus ENSONIG00000017061 I 0.817
ENSPMAG00000006175 Petromyzon marinus ENSPMAG00000006175 I 0.817
Si039719m.g Setaria italica Si039719m.g I 0.817
SPBR_06113 Sporothrix brasiliensis SPBR_06113 I 0.817
THOM_0429 Trachipleistophora hominis THOM_0429 I 0.817
VCUG_02118 Vavraia culicis VCUG_02118 I 0.817
Gorai.013G202900 Gossypium raimondii Gorai.013G202900 I 0.817
HHAL004028-PA Halyomorpha halys HHAL004028-PA I 0.817
LLOJ006615 Lutzomyia longipalpis LLOJ006615 I 0.817
PPAI004956 Phlebotomus papatasi PPAI004956 I 0.817
DAPPUDRAFT_194512 Daphnia pulex DAPPUDRAFT_194512 I 0.807
Sb01g017130 Sorghum bicolor Sb01g017130 I 0.807
TC008403 Tribolium castaneum TC008403 I 0.807
TriadG50358 Trichoplax adhaerens TriadG50358 I 0.807
SMU15013179 Schmidtea mediterranea SMU15013179 I 0.807
ENSAPLG00000006951 Anas platyrhynchos ENSAPLG00000006951 I 0.798
TBPL2 Gallus gallus ENSGALG00000012145 I 0.798
TBPL2 Meleagris gallopavo ENSMGAG00000013657 I 0.798
tbp Oryzias latipes ENSORLG00000010757 I 0.798
TBPL2 Tursiops truncatus ENSTTRG00000002034 I 0.798
GI18943 Drosophila mojavensis FBgn0141682 I 0.798
K437DRAFT_258899 Tilletiaria anomala K437DRAFT_258899 I 0.798
NAPIS_ORF00497 Nosema apis NAPIS_ORF00497 I 0.798
NAPIS_ORF01258 Nosema apis NAPIS_ORF01258 I 0.798
29822.m003403 Ricinus communis 29822.m003403 I 0.798
Ciclev10022324m.g Citrus clementina Ciclev10022324m.g I 0.793
CHLREDRAFT_144556 Chlamydomonas reinhardtii CHLREDRAFT_144556 I 0.789
TBPL2 Microcebus murinus ENSMICG00000000943 I 0.789
tbpl2 Tetraodon nigroviridis ENSTNIG00000002597 I 0.789
trf3 Takifugu rubripes ENSTRUG00000009283 I 0.789
tbpl2.L Xenopus laevis XB-GENE-876147 I 0.789
chr1.LjT45A19.110.nd Lotus japonicus chr1.LjT45A19.110.nd I 0.785
Aqu1.225918 Amphimedon queenslandica Aqu1.225918 I 0.780
TBPL2 Canis familiaris ENSCAFG00000015052 I 0.780
ATG14 Dasypus novemcinctus ENSDNOG00000015108 I 0.780
H311_04080 Anncaliia algerae H311_04080 I 0.780
OLONG_006902 Oryza longistaminata OLONG_006902 I 0.780
csin110354 Clonorchis sinensis csin110354 I 0.780
T265_13707 Opisthorchis viverrini T265_13707 I 0.780
ML03273a Mnemiopsis leidyi ML03273a I 0.771
LjSGA_031793.1 Lotus japonicus LjSGA_031793.1 I 0.771
TBPL2 Cavia porcellus ENSCPOG00000006151 I 0.761
ENSECAG00000008702 Equus caballus ENSECAG00000008702 I 0.761
ENSOARG00000015944 Ovis aries ENSOARG00000015944 I 0.761
MTR_3g065900 Medicago truncatula MTR_3g065900 N 0.761
Tal_R008176 Tyto alba Tal_R008176 I 0.761
e_gw1.11.176.1 Naegleria gruberi e_gw1.11.176.1 I 0.761
mgf012063m Mimulus guttatus mgf012063m I 0.755
PDK_20s1536561g001 Phoenix dactylifera PDK_20s1536561g001 I 0.752
HmN_000119900 Hymenolepis microstoma HmN_000119900 I 0.752
HNAJ_0000219201 Hymenolepis nana HNAJ_0000219201 I 0.752
MTR_3g066070 Medicago truncatula MTR_3g066070 N 0.743
RSKR_0000436900 Rhabditophanes kr3021 RSKR_0000436900 I 0.743
TriadG22173 Trichoplax adhaerens TriadG22173 I 0.734
EURHEDRAFT_409588 Aspergillus ruber EURHEDRAFT_409588 I 0.732
M404DRAFT_1000909 Pisolithus tinctorius M404DRAFT_1000909 I 0.732
M413DRAFT_438675 Hebeloma cylindrosporum M413DRAFT_438675 I 0.732
M438DRAFT_342525 Aureobasidium pullulans M438DRAFT_342525 I 0.732
SNAPOd2T00004230001 Oikopleura dioica SNAPOd2T00004230001 I 0.727
EBI_26482 Enterocytozoon bieneusi EBI_26482 I 0.725
ENSBTAG00000046809 Bos taurus ENSBTAG00000046809 I 0.725
GRMZM2G466938 Zea mays GRMZM2G466938 I 0.725
M408DRAFT_329006 Serendipita vermifera M408DRAFT_329006 I 0.724
Ca_19794 Cicer arietinum Ca_19794 N 0.721
CAOG_06656 Capsaspora owczarzaki CAOG_06656 I 0.716
PPA00840 Pristionchus pacificus PPA00840 I 0.716