tbp.L (Xenopus laevis)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 XB-GENE-6253887 T343259_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		1.000 1.000
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		1.000 1.000
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		1.000 1.000
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		1.000 1.000
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		1.000 1.000
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		1.000 1.000
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		1.000 1.000
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		1.000 1.000
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		1.000 1.000
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		1.000 1.000
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.808 0.808
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.808 0.808
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.808 0.808
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAI06645 TBP 120 202
AAI06645 TBP 210 293
CAA46832 TBP 120 202
CAA46832 TBP 210 293

Links

Other TBP family TFs
Other Xenopus laevis TFs

774 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRE2 Arabidopsis thaliana AT5G15160 N
Bo00958s010 Brassica oleracea Bo00958s010 N
Bo2g012420 Brassica oleracea Bo2g012420 N
Bostr.2902s0250 Boechera stricta Bostr.2902s0250 N
Bra008716 Brassica rapa Bra008716 N
Cagra.1036s0041 Capsella grandiflora Cagra.1036s0041 N
Carubv10002337m.g Capsella rubella Carubv10002337m.g N
mgf001503m Mimulus guttatus mgf001503m N
BNQ2 Arabidopsis lyrata scaffold_601543.1 N
Thhalv10015131m.g Eutrema salsugineum Thhalv10015131m.g N
VIT_01s0026g02030 Vitis vinifera VIT_01s0026g02030 N