chr1.LjT45A19.110.nd (Lotus japonicus)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 chr1.LjT45A19.110.nd T343269_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.723 0.723
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.723 0.723
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.723 0.723
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.723 0.723
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.723 0.723
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.723 0.723
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.723 0.723
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.723 0.723
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.723 0.723
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.723 0.723
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.708 0.708
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.708 0.708
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.LjT45A19.110.nd TBP 1 25
chr1.LjT45A19.110.nd TBP 33 74

Links

Other TBP family TFs
Other Lotus japonicus TFs

170 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OPUNC03G21560 Oryza punctata OPUNC03G21560 I 0.879
SapurV1A.0308s0180 Salix purpurea SapurV1A.0308s0180 I 0.862
MTR_4g029010 Medicago truncatula MTR_4g029010 I 0.846
Si023295m.g Setaria italica Si023295m.g I 0.846
Pavir.Ib03379 Panicum virgatum Pavir.Ib03379 I 0.815
BGIOSGA013244 Oryza indica BGIOSGA013244 I 0.785
BRADI4G01150 Brachypodium distachyon BRADI4G01150 I 0.785
GLYMA09G41330 Glycine max GLYMA09G41330 I 0.785
GRMZM2G149238 Zea mays GRMZM2G149238 I 0.785
GRMZM2G161418 Zea mays GRMZM2G161418 I 0.785
ORGLA06G0285000 Oryza glaberrima ORGLA06G0285000 I 0.785
ORUFI03G29280 Oryza rufipogon ORUFI03G29280 I 0.785
POPTR_0019s04890 Populus trichocarpa POPTR_0019s04890 I 0.785
Sb08g022273 Sorghum bicolor Sb08g022273 I 0.785
Traes_4AL_D48452758 Triticum aestivum Traes_4AL_D48452758 I 0.785
Pm000066 Prunus mume Pm000066 I 0.785
gene01591-v1.0-hybrid Fragaria vesca gene01591-v1.0-hybrid I 0.785
Gorai.004G244700 Gossypium raimondii Gorai.004G244700 I 0.785
Gorai.013G202900 Gossypium raimondii Gorai.013G202900 I 0.785
orange1.1g029591m.g Citrus sinensis orange1.1g029591m.g I 0.785
Pavir.Ib04166 Panicum virgatum Pavir.Ib04166 I 0.785
Pavir.J18057 Panicum virgatum Pavir.J18057 I 0.785
Pavir.J26398 Panicum virgatum Pavir.J26398 I 0.785
LjT45I18.100.nd Lotus japonicus LjT45I18.100.nd I 0.785
MLOC_37365 Hordeum vulgare MLOC_37365 I 0.769
Traes_5AS_03EE89960 Triticum aestivum Traes_5AS_03EE89960 I 0.769
Traes_5BS_AD70A5AF7 Triticum aestivum Traes_5BS_AD70A5AF7 I 0.769
mgf009543m Mimulus guttatus mgf009543m I 0.769
mgf012506m Mimulus guttatus mgf012506m I 0.769
RO3G_15549 Rhizopus oryzae RO3G_15549 I 0.754
TBP2 Arabidopsis thaliana AT1G55520 I 0.754
BGIOSGA031868 Oryza indica BGIOSGA031868 I 0.754
Bo3g185290 Brassica oleracea Bo3g185290 I 0.754
Bo6g051360 Brassica oleracea Bo6g051360 I 0.754
Bra030855 Brassica rapa Bra030855 I 0.754
TBP2 Arabidopsis lyrata fgenesh2_kg.1__4564__AT1G55520.2 I 0.754
GLYMA19G28780 Glycine max GLYMA19G28780 I 0.754
OMERI10G08240 Oryza meridionalis OMERI10G08240 I 0.754
ONIVA01G08510 Oryza nivara ONIVA01G08510 I 0.754
ORGLA10G0095800 Oryza glaberrima ORGLA10G0095800 I 0.754
ORUFI10G11330 Oryza rufipogon ORUFI10G11330 I 0.754
OS10G0432300 Oryza sativa OS10G0432300 I 0.754
RHTO_08020 Rhodosporidium toruloides RHTO_08020 I 0.754
e_gw1.11.241.1 Mucor circinelloides e_gw1.11.241.1 I 0.754
e_gw1.1.2234.1 Mucor circinelloides e_gw1.1.2234.1 I 0.754
fgeneshPB_pg.12__294 Phycomyces blakesleeanus fgeneshPB_pg.12__294 I 0.754
Aquca_037_00296 Aquilegia coerulea Aquca_037_00296 I 0.754
Bostr.6758s0027 Boechera stricta Bostr.6758s0027 I 0.754
Cagra.0001s0028 Capsella grandiflora Cagra.0001s0028 I 0.754
Carubv10010337m.g Capsella rubella Carubv10010337m.g I 0.754
Gorai.007G288000 Gossypium raimondii Gorai.007G288000 I 0.754
RO3G_16620 Rhizopus oryzae RO3G_16620 I 0.738
ACEP14716 Atta cephalotes ACEP14716 I 0.738
TBP1 Arabidopsis thaliana AT3G13445 I 0.738
Bo5g132530 Brassica oleracea Bo5g132530 I 0.738
Bra027434 Brassica rapa Bra027434 I 0.738
DACRYDRAFT_75233 Dacryopinax sp DACRYDRAFT_75233 I 0.738
DI09_319p10 Microsporidia sp DI09_319p10 I 0.738
GB47180 Apis mellifera GB47180 I 0.738
GLOINDRAFT_79885 Rhizophagus irregularis GLOINDRAFT_79885 I 0.738
HMEL016424 Heliconius melpomene HMEL016424 I 0.738
KGM_04261 Danaus plexippus KGM_04261 I 0.738
L798_11200 Zootermopsis nevadensis L798_11200 I 0.738
LPERR10G07850 Leersia perrieri LPERR10G07850 I 0.738
MCINX007129 Melitaea cinxia MCINX007129 I 0.738
MVLG_00350 Microbotryum violaceum MVLG_00350 I 0.738
PNEG_00724 Pneumocystis murina PNEG_00724 I 0.738
SINV24483 Solenopsis invicta SINV24483 I 0.738
SJAG_00421 Schizosaccharomyces japonicus SJAG_00421 I 0.738
TC008403 Tribolium castaneum TC008403 I 0.738
Cflo_04179--XP_623088.1_APIME Camponotus floridanus Cflo_04179--XP_623088.1_APIME I 0.738
Hsal_00478--XP_623088.1_APIME Harpegnathos saltator Hsal_00478--XP_623088.1_APIME I 0.738
Bostr.3640s0136 Boechera stricta Bostr.3640s0136 I 0.738
Cagra.0690s0017 Capsella grandiflora Cagra.0690s0017 I 0.738
Carubv10014676m.g Capsella rubella Carubv10014676m.g I 0.738
PredSwiss_ASS2010_1907.1 Pneumocystis carinii PredSwiss_ASS2010_1907.1 I 0.738
PredSwiss_CON251.1 Pneumocystis carinii PredSwiss_CON251.1 I 0.738
PredSwiss_EST785.1 Pneumocystis carinii PredSwiss_EST785.1 I 0.738
LLOJ006615 Lutzomyia longipalpis LLOJ006615 I 0.738
PPAI004956 Phlebotomus papatasi PPAI004956 I 0.738
CPAG_04505 Candida parapsilosis CPAG_04505 I 0.723
A1Q1_08290 Trichosporon asahii A1Q1_08290 I 0.723
AGABI2DRAFT_44722 Agaricus bisporus AGABI2DRAFT_44722 I 0.723
BN946_scf185000.g31 Trametes cinnabarina BN946_scf185000.g31 I 0.723
CORT_0A11870 Candida orthopsilosis CORT_0A11870 I 0.723
DAPPUDRAFT_194512 Daphnia pulex DAPPUDRAFT_194512 I 0.723
ENSAMXG00000003582 Astyanax mexicanus ENSAMXG00000003582 I 0.723
ENSBTAG00000046809 Bos taurus ENSBTAG00000046809 I 0.723
TBPL2 Cavia porcellus ENSCPOG00000006151 I 0.723
tbp Danio rerio ENSDARG00000014994 I 0.723
tbp Gasterosteus aculeatus ENSGACG00000016147 I 0.723
ENSGMOG00000012435 Gadus morhua ENSGMOG00000012435 I 0.723
ENSONIG00000017061 Oreochromis niloticus ENSONIG00000017061 I 0.723
GI18943 Drosophila mojavensis FBgn0141682 I 0.723
FIBRA_07233 Fibroporia radiculosa FIBRA_07233 I 0.723
FOMPIDRAFT_1017649 Fomitopsis pinicola FOMPIDRAFT_1017649 I 0.723
GALMADRAFT_264138 Galerina marginata GALMADRAFT_264138 I 0.723
HETIRDRAFT_242765 Heterobasidion irregulare HETIRDRAFT_242765 I 0.723
LELG_01062 Lodderomyces elongisporus LELG_01062 I 0.723
M378DRAFT_176716 Amanita muscaria M378DRAFT_176716 I 0.723
Moror_8271 Moniliophthora roreri Moror_8271 I 0.723
O9G_006239 Rozella allomycis O9G_006239 I 0.723
PaG_04811 Pseudozyma aphidis PaG_04811 I 0.723
PAN0_004d2209 Pseudozyma antarctica PAN0_004d2209 I 0.723
PHACADRAFT_256913 Phanerochaete carnosa PHACADRAFT_256913 I 0.723
PHLGIDRAFT_111859 Phlebiopsis gigantea PHLGIDRAFT_111859 I 0.723
PHSY_006238 Pseudozyma hubeiensis PHSY_006238 I 0.723
PHUM533080 Pediculus humanus PHUM533080 I 0.723
PICST_38880 Scheffersomyces stipitis PICST_38880 I 0.723
PILCRDRAFT_51869 Piloderma croceum PILCRDRAFT_51869 I 0.723
PISMIDRAFT_684343 Pisolithus microcarpus PISMIDRAFT_684343 I 0.723
PLEOSDRAFT_1023395 Pleurotus ostreatus PLEOSDRAFT_1023395 I 0.723
PSEUBRA_SCAF4g05047 Pseudozyma brasiliensis PSEUBRA_SCAF4g05047 I 0.723
SCLCIDRAFT_144717 Scleroderma citrinum SCLCIDRAFT_144717 I 0.723
SELMODRAFT_16705 Selaginella moellendorffii SELMODRAFT_16705 I 0.723
SELMODRAFT_37142 Selaginella moellendorffii SELMODRAFT_37142 I 0.723
SERLA73DRAFT_76226 Serpula lacrymans SERLA73DRAFT_76226 I 0.723
Si039719m.g Setaria italica Si039719m.g I 0.723
SPAPADRAFT_58486 Spathaspora passalidarum SPAPADRAFT_58486 I 0.723
sr13595 Sporisorium reilianum sr13595 I 0.723
UHOR_03923 Ustilago hordei UHOR_03923 I 0.723
UM02394 Ustilago maydis UM02394 I 0.723
e_gwh1.1.1.994.1 Pichia stipitis e_gwh1.1.1.994.1 I 0.723
gwh2.1.1035.1 Phanerochaete chrysosporium gwh2.1.1035.1 I 0.723
Aquca_013_00902 Aquilegia coerulea Aquca_013_00902 I 0.723
estExt_fgenesh3_kg.C_20416 Heterobasidion annosum estExt_fgenesh3_kg.C_20416 I 0.723
SNOG_06135 Stagonospora nodorum SNOG_06135 I 0.708
Aqu1.225918 Amphimedon queenslandica Aqu1.225918 I 0.708
BOTBODRAFT_52530 Botryobasidium botryosum BOTBODRAFT_52530 I 0.708
CNH01090 Cryptococcus neoformans CNH01090 I 0.708
ENSAPLG00000006951 Anas platyrhynchos ENSAPLG00000006951 I 0.708
TBPL2 Callithrix jacchus ENSCJAG00000018372 I 0.708
Tbpl2 Dipodomys ordii ENSDORG00000003307 I 0.708
ENSFALG00000003735 Ficedula albicollis ENSFALG00000003735 I 0.708
TBPL2 Gallus gallus ENSGALG00000012145 I 0.708
TBPL2 Gorilla gorilla ENSGGOG00000001055 I 0.708
ENSLACG00000019034 Latimeria chalumnae ENSLACG00000019034 I 0.708
TBPL2 Meleagris gallopavo ENSMGAG00000013657 I 0.708
ENSOARG00000015944 Ovis aries ENSOARG00000015944 I 0.708
ENSPMAG00000006175 Petromyzon marinus ENSPMAG00000006175 I 0.708
TBPL2 Tursiops truncatus ENSTTRG00000002034 I 0.708
J056_000874 Wallemia ichthyophaga J056_000874 I 0.708
K437DRAFT_258899 Tilletiaria anomala K437DRAFT_258899 I 0.708
L804_06395 Cryptococcus gattii L804_06395 I 0.708
LEMA_P121430.1 Leptosphaeria maculans LEMA_P121430.1 I 0.708
PIIN_00750 Piriformospora indica PIIN_00750 I 0.708
PTTG_01229 Puccinia triticina PTTG_01229 I 0.708
PTTG_06059 Puccinia triticina PTTG_06059 I 0.708
SKUD_163604 Saccharomyces kudriavzevii SKUD_163604 I 0.708
SNOG_06135 Phaeosphaeria nodorum SNOG_06135 I 0.708
SOCG_04191 Schizosaccharomyces octosporus SOCG_04191 I 0.708
tbp1 Schizosaccharomyces pombe SPAC29E6.08 I 0.708
SPOG_00351 Schizosaccharomyces cryophilus SPOG_00351 I 0.708
SU7_0942 Saccharomyces arboricola SU7_0942 I 0.708
TPHA_0A02110 Tetrapisispora phaffii TPHA_0A02110 I 0.708
TriadG50358 Trichoplax adhaerens TriadG50358 I 0.708
WALSEDRAFT_33220 Wallemia sebi WALSEDRAFT_33220 I 0.708
SPT15 Saccharomyces cerevisiae YER148W D 0.708
Aan_R001616 Calypte anna Aan_R001616 I 0.708
Alligator_sinensis_CCG004402.1 Alligator sinensis Alligator_sinensis_CCG004402.1 I 0.708
Myotis_brandtii_TBPL2_10011178 Myotis brandtii Myotis_brandtii_TBPL2_10011178 I 0.708
Tal_R008176 Tyto alba Tal_R008176 I 0.708
e_gw1.11.176.1 Naegleria gruberi e_gw1.11.176.1 I 0.708
estExt_fgenesh2_pg.C_680056 Branchiostoma floridae estExt_fgenesh2_pg.C_680056 I 0.708
Thhalv10022351m.g Eutrema salsugineum Thhalv10022351m.g I 0.708
HHAL004028-PA Halyomorpha halys HHAL004028-PA I 0.708
tbpl2.L Xenopus laevis XB-GENE-876147 I 0.708
6284_YER148W Saccharomyces mikatae 6284_YER148W I 0.708
6417_YER148W Saccharomyces paradoxus 6417_YER148W I 0.708
6631_YER148W Saccharomyces bayanus 6631_YER148W I 0.708