CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
ACOC_0000447501
(
Angiostrongylus costaricensis
)
TBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00352 (TBP)
IPR000814
ACOC_0000447501
T343395_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tbp
M00216_2.00
Mus musculus
NWWWWAW
WTWWWWN
PBM
Badis et al.(2009)
Tbp_pr781
0.732
0.732
TBP
M08231_2.00
Homo sapiens
YATTTGCATD
HATGCAAATR
ChIP-seq
Contrino et al.(2012)
Mv129
0.732
0.732
TBP
M09432_2.00
Homo sapiens
MTATAWAWRS
SYWTWTATAK
Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A
0.732
0.732
Tbp
M09433_2.00
Mus musculus
VTATAAAARS
SYTTTTATAB
Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A
0.732
0.732
TBP
M11388_2.00
Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB
Transfac
Matys et al.(2006)
V$TATA_01
0.732
0.732
TBP
M11389_2.00
Homo sapiens
NCYWTAAAAD
HTTTTAWRGN
Transfac
Matys et al.(2006)
V$TATA_C
0.732
0.732
TBP
M11390_2.00
Homo sapiens
KATAAATW
WATTTATM
Transfac
Matys et al.(2006)
V$TBP_01
0.732
0.732
TBP
M11391_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6_01
0.732
0.732
TBP
M11392_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6
0.732
0.732
TBP
M11491_2.00
Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB
Unknown
Mathelier et al.(2014)
MA0108.2
0.732
0.732
SPT15
M01567_2.00
Saccharomyces cerevisiae
NNDWDAW
WTHWHNN
PBM
Zhu et al.(2009)
Spt15
0.709
0.709
SPT15
M08609_2.00
Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN
Misc
DeBoer et al.(2011)
YER148W_798
0.709
0.709
SPT15
M11393_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$TBP_Q6
0.709
0.709
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ACOC_0000447501-mRNA-1
TBP
1
43
MRIREPRTTALIFSSGKMVTSGAKSICASRQASRKFARIVQKV
ACOC_0000447501-mRNA-1
TBP
51
134
DFKIQNVVGSCDVRFSIQLEGLCITHAPFSSYEPELFPGLIYRMVQPRVVLLIFVSGKVVITGGRNQEDIDQAFKHIYPILRAF
Links
Other
TBP
family TFs
Other
Angiostrongylus costaricensis
TFs
38 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
NECAME_12365
Necator americanus
NECAME_12365
I
0.874
ANCDUO_08400
Ancylostoma duodenale
ANCDUO_08400
I
0.873
HPLM_0001046201
Haemonchus placei
HPLM_0001046201
I
0.858
HPBE_0000236501
Heligmosomoides bakeri
HPBE_0000236501
I
0.841
OESDEN_24315
Oesophagostomum dentatum
OESDEN_24315
N
0.810
ANCDUO_13676
Ancylostoma duodenale
ANCDUO_13676
I
0.787
ENSOANG00000022637
Ornithorhynchus anatinus
ENSOANG00000022637
I
0.778
TBPL2
Gallus gallus
ENSGALG00000012145
I
0.756
TBPL2
Meleagris gallopavo
ENSMGAG00000013657
I
0.756
L596_g25394
Steinernema carpocapsae
L596_g25394
I
0.756
DAPPUDRAFT_194512
Daphnia pulex
DAPPUDRAFT_194512
I
0.748
ENSAPLG00000006951
Anas platyrhynchos
ENSAPLG00000006951
I
0.740
ENSECAG00000008702
Equus caballus
ENSECAG00000008702
I
0.740
GB47180
Apis mellifera
GB47180
I
0.740
HMEL016424
Heliconius melpomene
HMEL016424
I
0.740
KGM_04261
Danaus plexippus
KGM_04261
I
0.740
MCINX007129
Melitaea cinxia
MCINX007129
I
0.740
PHUM533080
Pediculus humanus
PHUM533080
I
0.740
tbpl2.L
Xenopus laevis
XB-GENE-876147
I
0.740
ACEP14716
Atta cephalotes
ACEP14716
I
0.732
TBPL2
Cavia porcellus
ENSCPOG00000006151
I
0.732
GI18943
Drosophila mojavensis
FBgn0141682
I
0.732
Cflo_04179--XP_623088.1_APIME
Camponotus floridanus
Cflo_04179--XP_623088.1_APIME
I
0.732
tbp
Oryzias latipes
ENSORLG00000010757
I
0.724
TriadG22173
Trichoplax adhaerens
TriadG22173
I
0.717
DACRYDRAFT_75233
Dacryopinax sp
DACRYDRAFT_75233
I
0.709
SKUD_163604
Saccharomyces kudriavzevii
SKUD_163604
I
0.709
SU7_0942
Saccharomyces arboricola
SU7_0942
I
0.709
TriadG50358
Trichoplax adhaerens
TriadG50358
I
0.709
M408DRAFT_329006
Serendipita vermifera
M408DRAFT_329006
I
0.701
PICST_38880
Scheffersomyces stipitis
PICST_38880
I
0.701
PIIN_00750
Piriformospora indica
PIIN_00750
I
0.701
PV09_01314
Verruconis gallopava
PV09_01314
I
0.701
PV10_01351
Exophiala mesophila
PV10_01351
I
0.701
SOCG_04191
Schizosaccharomyces octosporus
SOCG_04191
I
0.701
tbp1
Schizosaccharomyces pombe
SPAC29E6.08
I
0.701
SPOG_00351
Schizosaccharomyces cryophilus
SPOG_00351
I
0.701
e_gwh1.1.1.994.1
Pichia stipitis
e_gwh1.1.1.994.1
I
0.701