ACOC_0000447501 (Angiostrongylus costaricensis)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 ACOC_0000447501 T343395_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.732 0.732
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.732 0.732
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.732 0.732
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.732 0.732
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.732 0.732
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.732 0.732
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.732 0.732
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.732 0.732
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.732 0.732
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.732 0.732
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.709 0.709
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.709 0.709
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.709 0.709
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ACOC_0000447501-mRNA-1 TBP 1 43
ACOC_0000447501-mRNA-1 TBP 51 134

Links

Other TBP family TFs
Other Angiostrongylus costaricensis TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30169.m006403 Ricinus communis 30169.m006403 I
AT2G42280 Arabidopsis thaliana AT2G42280 D
BGIOSGA016651 Oryza indica BGIOSGA016651 I
BHLH122 Arabidopsis thaliana AT1G51140 D
Bo4g015860 Brassica oleracea Bo4g015860 I
Bo4g191390 Brassica oleracea Bo4g191390 I
Bo6g024810 Brassica oleracea Bo6g024810 I
Bostr.25993s0551 Boechera stricta Bostr.25993s0551 I
Bostr.26675s0074 Boechera stricta Bostr.26675s0074 I
Bra004678 Brassica rapa Bra004678 I
Bra016886 Brassica rapa Bra016886 I
Bra018896 Brassica rapa Bra018896 I
BRADI3G48070 Brachypodium distachyon BRADI3G48070 I
BRADI4G33670 Brachypodium distachyon BRADI4G33670 I
Cagra.2093s0006 Capsella grandiflora Cagra.2093s0006 I
Cagra.2636s0012 Capsella grandiflora Cagra.2636s0012 I
Carubv10009458m.g Capsella rubella Carubv10009458m.g I
Carubv10023498m.g Capsella rubella Carubv10023498m.g I
Ca_02662 Cicer arietinum Ca_02662 I
Ca_14223 Cicer arietinum Ca_14223 I
Ca_18899 Cicer arietinum Ca_18899 I
Ciclev10015437m.g Citrus clementina Ciclev10015437m.g I
Cla006394 Citrullus lanatus Cla006394 I
Cucsa.143260 Cucumis sativus Cucsa.143260 I
estExt_fgenesh1_pg.C_2130035 Physcomitrella patens estExt_fgenesh1_pg.C_2130035 N
Eucgr.B03669 Eucalyptus grandis Eucgr.B03669 I
Eucgr.J00796 Eucalyptus grandis Eucgr.J00796 I
e_gw1.83.237.1 Physcomitrella patens e_gw1.83.237.1 I
fgenesh2_kg.1__4183__AT1G51140.1 Arabidopsis lyrata fgenesh2_kg.1__4183__AT1G51140.1 I
GLYMA11G13960 Glycine max GLYMA11G13960 I
GLYMA12G05930 Glycine max GLYMA12G05930 I
GLYMA13G41670 Glycine max GLYMA13G41670 I
GLYMA15G03740 Glycine max GLYMA15G03740 I
Gorai.009G071900 Gossypium raimondii Gorai.009G071900 I
GRMZM2G085467 Zea mays GRMZM2G085467 I
GRMZM2G142932 Zea mays GRMZM2G142932 I
GRMZM2G153454 Zea mays GRMZM2G153454 I
GRMZM2G417597 Zea mays GRMZM2G417597 I
GRMZM5G879527 Zea mays GRMZM5G879527 N
GSMUA_Achr3G11110_001 Musa acuminata GSMUA_Achr3G11110_001 I
GSMUA_Achr9G27780_001 Musa acuminata GSMUA_Achr9G27780_001 I
LPERR04G13560 Leersia perrieri LPERR04G13560 I
LPERR08G16800 Leersia perrieri LPERR08G16800 I
LPERR09G10800 Leersia perrieri LPERR09G10800 I
MDP0000307685 Malus domestica MDP0000307685 I
mgf016092m Mimulus guttatus mgf016092m I
MLOC_12058 Hordeum vulgare MLOC_12058 I
MLOC_30102 Hordeum vulgare MLOC_30102 I
MTR_1g052470 Medicago truncatula MTR_1g052470 I
MTR_2g098310 Medicago truncatula MTR_2g098310 I
MTR_4g065870 Medicago truncatula MTR_4g065870 I
OB04G24170 Oryza brachyantha OB04G24170 I
OBART04G16900 Oryza barthii OBART04G16900 I
OGLUM04G16920 Oryza glumaepatula OGLUM04G16920 I
OMERI04G14260 Oryza meridionalis OMERI04G14260 I
ONIVA04G15000 Oryza nivara ONIVA04G15000 I
OPUNC04G14700 Oryza punctata OPUNC04G14700 I
orange1.1g015337m.g Citrus sinensis orange1.1g015337m.g I
ORGLA04G0140000 Oryza glaberrima ORGLA04G0140000 I
ORUFI04G18350 Oryza rufipogon ORUFI04G18350 I
OS04G0489600 Oryza sativa OS04G0489600 I
Pavir.Ba00676 Panicum virgatum Pavir.Ba00676 I
Pavir.Ba01718 Panicum virgatum Pavir.Ba01718 I
Pavir.Bb03157 Panicum virgatum Pavir.Bb03157 I
Pavir.Fa00493 Panicum virgatum Pavir.Fa00493 I
Pavir.J00377 Panicum virgatum Pavir.J00377 I
Pavir.J14004 Panicum virgatum Pavir.J14004 I
Pavir.J25484 Panicum virgatum Pavir.J25484 I
PK20089.1 Cannabis sativa PK20089.1 I
POPTR_0003s22290 Populus trichocarpa POPTR_0003s22290 I
SapurV1A.0009s0400 Salix purpurea SapurV1A.0009s0400 I
Sb02g028300 Sorghum bicolor Sb02g028300 I
Sb07g027810 Sorghum bicolor Sb07g027810 I
scaffold_403077.1 Arabidopsis lyrata scaffold_403077.1 I
Si013950m.g Setaria italica Si013950m.g I
Si029614m.g Setaria italica Si029614m.g I
Si030166m.g Setaria italica Si030166m.g I
TCM_040564 Theobroma cacao TCM_040564 I
Thhalv10011463m.g Eutrema salsugineum Thhalv10011463m.g I
VIT_06s0004g01740 Vitis vinifera VIT_06s0004g01740 I