CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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L898_g32593
(
Steinernema monticolum
)
TBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00352 (TBP)
IPR000814
L898_g32593
T343536_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tbp
M00216_2.00
Mus musculus
NWWWWAW
WTWWWWN
PBM
Badis et al.(2009)
Tbp_pr781
0.820
0.820
TBP
M08231_2.00
Homo sapiens
YATTTGCATD
HATGCAAATR
ChIP-seq
Contrino et al.(2012)
Mv129
0.820
0.820
TBP
M09432_2.00
Homo sapiens
MTATAWAWRS
SYWTWTATAK
Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A
0.820
0.820
Tbp
M09433_2.00
Mus musculus
VTATAAAARS
SYTTTTATAB
Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A
0.820
0.820
TBP
M11388_2.00
Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB
Transfac
Matys et al.(2006)
V$TATA_01
0.820
0.820
TBP
M11389_2.00
Homo sapiens
NCYWTAAAAD
HTTTTAWRGN
Transfac
Matys et al.(2006)
V$TATA_C
0.820
0.820
TBP
M11390_2.00
Homo sapiens
KATAAATW
WATTTATM
Transfac
Matys et al.(2006)
V$TBP_01
0.820
0.820
TBP
M11391_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6_01
0.820
0.820
TBP
M11392_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6
0.820
0.820
TBP
M11491_2.00
Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB
Unknown
Mathelier et al.(2014)
MA0108.2
0.820
0.820
SPT15
M01567_2.00
Saccharomyces cerevisiae
NNDWDAW
WTHWHNN
PBM
Zhu et al.(2009)
Spt15
0.719
0.719
SPT15
M08609_2.00
Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN
Misc
DeBoer et al.(2011)
YER148W_798
0.719
0.719
SPT15
M11393_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$TBP_Q6
0.719
0.719
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
L898_g32593.t1
TBP
144
226
QPQLQNIVSTVNLGVPLDLKKIALQARNAEFNPKRFAAVIMRIRDPRTTALIFSSGKMVCTGAKSEEASRLAARKYARIVQKL
L898_g32593.t1
TBP
234
317
EFKVQNMVGSCDVKFPIQLEGICLMHNQFSTYEPELFPGLIYRMVKPRVVLLIFVSGKVVITGAKYKKDIDDAFSQIYPILKTY
Links
Other
TBP
family TFs
Other
Steinernema monticolum
TFs
748 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CGI_10003574
Crassostrea gigas
CGI_10003574
I
cxxc1a
Danio rerio
ENSDARG00000101996
I
cxxc1a
Gasterosteus aculeatus
ENSGACG00000001153
I
ENSAMXG00000016944
Astyanax mexicanus
ENSAMXG00000016944
I
Myotis_brandtii_CXXC1_10005914
Myotis brandtii
Myotis_brandtii_CXXC1_10005914
I
Sakowv30043410m.g
Saccoglossus kowalevskii
Sakowv30043410m.g
I
SMAR003348
Strigamia maritima
SMAR003348
I