CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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maker-nMf.1.1.scaf22650-augustus-gene-0.3
(
Meloidogyne floridensis
)
TBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00352 (TBP)
IPR000814
maker-nMf.1.1.scaf22650-augustus-gene-0.3
T343545_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tbp
M00216_2.00
Mus musculus
NWWWWAW
WTWWWWN
PBM
Badis et al.(2009)
Tbp_pr781
0.780
0.780
TBP
M08231_2.00
Homo sapiens
YATTTGCATD
HATGCAAATR
ChIP-seq
Contrino et al.(2012)
Mv129
0.780
0.780
TBP
M09432_2.00
Homo sapiens
MTATAWAWRS
SYWTWTATAK
Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A
0.780
0.780
Tbp
M09433_2.00
Mus musculus
VTATAAAARS
SYTTTTATAB
Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A
0.780
0.780
TBP
M11388_2.00
Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB
Transfac
Matys et al.(2006)
V$TATA_01
0.780
0.780
TBP
M11389_2.00
Homo sapiens
NCYWTAAAAD
HTTTTAWRGN
Transfac
Matys et al.(2006)
V$TATA_C
0.780
0.780
TBP
M11390_2.00
Homo sapiens
KATAAATW
WATTTATM
Transfac
Matys et al.(2006)
V$TBP_01
0.780
0.780
TBP
M11391_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6_01
0.780
0.780
TBP
M11392_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6
0.780
0.780
TBP
M11491_2.00
Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB
Unknown
Mathelier et al.(2014)
MA0108.2
0.780
0.780
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
maker-nMf.1.1.scaf22650-augustus-gene-0.3-mRNA-1
TBP
20
100
VQYYLFSIHFLGVQLDLKQIALRARNAEYNPKRFAAVIMRIRDPRTTALIFSSGKMVCTGAKSEEMSRLAARKYARIVQKL
maker-nMf.1.1.scaf22650-augustus-gene-0.3-mRNA-1
TBP
108
137
EFKVQNMVGSCDVKFPIQLEGLYLIDKLNK
Links
Other
TBP
family TFs
Other
Meloidogyne floridensis
TFs
441 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aan_R004772
Calypte anna
Aan_R004772
I
Aan_R005804
Calypte anna
Aan_R005804
I
Aan_R013349
Calypte anna
Aan_R013349
I
Alligator_sinensis_CCG005717.1
Alligator sinensis
Alligator_sinensis_CCG005717.1
I
Alligator_sinensis_CCG012204.1
Alligator sinensis
Alligator_sinensis_CCG012204.1
I
Alligator_sinensis_CCG012205.1
Alligator sinensis
Alligator_sinensis_CCG012205.1
I
Alligator_sinensis_CCG018453.1
Alligator sinensis
Alligator_sinensis_CCG018453.1
I
CapteG160442
Capitella teleta
CapteG160442
I
Cmyd_10016552
Chelonia mydas
Cmyd_10016552
I
Cmyd_10020767
Chelonia mydas
Cmyd_10020767
I
ENSACAG00000003681
Anolis carolinensis
ENSACAG00000003681
I
ENSAMEG00000002144
Ailuropoda melanoleuca
ENSAMEG00000002144
I
ENSAMEG00000002149
Ailuropoda melanoleuca
ENSAMEG00000002149
I
ENSAMEG00000002684
Ailuropoda melanoleuca
ENSAMEG00000002684
I
ENSAMEG00000004503
Ailuropoda melanoleuca
ENSAMEG00000004503
I
ENSAMXG00000002320
Astyanax mexicanus
ENSAMXG00000002320
I
ENSAMXG00000002323
Astyanax mexicanus
ENSAMXG00000002323
I
ENSAMXG00000010931
Astyanax mexicanus
ENSAMXG00000010931
I
ENSAMXG00000010941
Astyanax mexicanus
ENSAMXG00000010941
I
ENSAMXG00000012325
Astyanax mexicanus
ENSAMXG00000012325
I
ENSAPLG00000002960
Anas platyrhynchos
ENSAPLG00000002960
I
ENSAPLG00000003027
Anas platyrhynchos
ENSAPLG00000003027
I
ENSAPLG00000010556
Anas platyrhynchos
ENSAPLG00000010556
I
ENSBTAP00000035289-D2
Bos grunniens
ENSBTAP00000035289-D2
I
ENSCPOG00000002374
Cavia porcellus
ENSCPOG00000002374
I
ENSCSAG00000007453
Chlorocebus sabaeus
ENSCSAG00000007453
I
ENSCSAG00000011405
Chlorocebus sabaeus
ENSCSAG00000011405
I
ENSCSAG00000011409
Chlorocebus sabaeus
ENSCSAG00000011409
I
ENSCSAG00000017494
Chlorocebus sabaeus
ENSCSAG00000017494
I
ENSDORG00000014318
Dipodomys ordii
ENSDORG00000014318
I
ENSFALG00000003772
Ficedula albicollis
ENSFALG00000003772
I
ENSFALG00000004344
Ficedula albicollis
ENSFALG00000004344
I
ENSFALG00000007091
Ficedula albicollis
ENSFALG00000007091
I
ENSFALG00000007094
Ficedula albicollis
ENSFALG00000007094
I
ENSFCAG00000030117
Felis catus
ENSFCAG00000030117
I
ENSGALG00000006497
Gallus gallus
ENSGALG00000006497
I
ENSGALG00000006810
Gallus gallus
ENSGALG00000006810
I
ENSGALG00000006811
Gallus gallus
ENSGALG00000006811
I
ENSGMOG00000001788
Gadus morhua
ENSGMOG00000001788
I
ENSGMOG00000001798
Gadus morhua
ENSGMOG00000001798
I
ENSGMOG00000004438
Gadus morhua
ENSGMOG00000004438
I
ENSGMOG00000019585
Gadus morhua
ENSGMOG00000019585
I
ENSLACG00000008525
Latimeria chalumnae
ENSLACG00000008525
I
ENSLACG00000014597
Latimeria chalumnae
ENSLACG00000014597
I
ENSLOCG00000003077
Lepisosteus oculatus
ENSLOCG00000003077
I
ENSLOCG00000003087
Lepisosteus oculatus
ENSLOCG00000003087
I
ENSLOCG00000007706
Lepisosteus oculatus
ENSLOCG00000007706
I
ENSLOCG00000007717
Lepisosteus oculatus
ENSLOCG00000007717
I
ENSLOCG00000015155
Lepisosteus oculatus
ENSLOCG00000015155
I
ENSMEUG00000009632
Macropus eugenii
ENSMEUG00000009632
I
ENSMEUG00000014290
Macropus eugenii
ENSMEUG00000014290
I
ENSMICG00000010339
Microcebus murinus
ENSMICG00000010339
I
ENSMODG00000021250
Monodelphis domestica
ENSMODG00000021250
I
ENSMPUG00000001786
Mustela putorius furo
ENSMPUG00000001786
I
ENSMPUG00000011375
Mustela putorius furo
ENSMPUG00000011375
I
ENSMPUG00000011764
Mustela putorius furo
ENSMPUG00000011764
I
ENSMPUG00000011767
Mustela putorius furo
ENSMPUG00000011767
I
ENSNLEG00000002375
Nomascus leucogenys
ENSNLEG00000002375
I
ENSNLEG00000002407
Nomascus leucogenys
ENSNLEG00000002407
I
ENSNLEG00000003005
Nomascus leucogenys
ENSNLEG00000003005
I
ENSNLEG00000007808
Nomascus leucogenys
ENSNLEG00000007808
I
ENSOARG00000005434
Ovis aries
ENSOARG00000005434
I
ENSOARG00000005467
Ovis aries
ENSOARG00000005467
I
ENSOARG00000010774
Ovis aries
ENSOARG00000010774
I
ENSONIG00000002716
Oreochromis niloticus
ENSONIG00000002716
I
ENSONIG00000005875
Oreochromis niloticus
ENSONIG00000005875
I
ENSONIG00000005878
Oreochromis niloticus
ENSONIG00000005878
I
ENSONIG00000006787
Oreochromis niloticus
ENSONIG00000006787
I
ENSONIG00000006788
Oreochromis niloticus
ENSONIG00000006788
I
ENSP00000282928
Macaca fascicularis
ENSP00000282928
I
ENSP00000282928-D1
Bos grunniens
ENSP00000282928-D1
I
ENSP00000287538
Macaca fascicularis
ENSP00000287538
I
ENSP00000287538-D1
Bos grunniens
ENSP00000287538-D1
I
ENSP00000397695
Macaca fascicularis
ENSP00000397695
I
ENSP00000397695-D1
Bos grunniens
ENSP00000397695-D1
I
ENSPANG00000005804
Papio anubis
ENSPANG00000005804
I
ENSPANG00000007601
Papio anubis
ENSPANG00000007601
I
ENSPANG00000011357
Papio anubis
ENSPANG00000011357
I
ENSPANG00000024745
Papio anubis
ENSPANG00000024745
I
ENSPFOG00000012158
Poecilia formosa
ENSPFOG00000012158
I
ENSPFOG00000012173
Poecilia formosa
ENSPFOG00000012173
I
ENSPFOG00000012982
Poecilia formosa
ENSPFOG00000012982
I
ENSPFOG00000013981
Poecilia formosa
ENSPFOG00000013981
I
ENSPFOG00000014007
Poecilia formosa
ENSPFOG00000014007
I
ENSPPYG00000005472
Pongo abelii
ENSPPYG00000005472
I
ENSPPYG00000014188
Pongo abelii
ENSPPYG00000014188
I
ENSPPYG00000020775
Pongo abelii
ENSPPYG00000020775
I
ENSPSIG00000004881
Pelodiscus sinensis
ENSPSIG00000004881
I
ENSPSIG00000005002
Pelodiscus sinensis
ENSPSIG00000005002
I
ENSPSIG00000009089
Pelodiscus sinensis
ENSPSIG00000009089
I
ENSPSIG00000009132
Pelodiscus sinensis
ENSPSIG00000009132
I
ENSPSIG00000011896
Pelodiscus sinensis
ENSPSIG00000011896
I
ENSSHAG00000003850
Sarcophilus harrisii
ENSSHAG00000003850
I
ENSSHAG00000015091
Sarcophilus harrisii
ENSSHAG00000015091
I
ENSSTOG00000000952
Ictidomys tridecemlineatus
ENSSTOG00000000952
I
ENSSTOG00000015977
Ictidomys tridecemlineatus
ENSSTOG00000015977
I
ENSSTOG00000023178
Ictidomys tridecemlineatus
ENSSTOG00000023178
I
ENSSTOG00000024153
Ictidomys tridecemlineatus
ENSSTOG00000024153
I
ENSTGUG00000008837
Taeniopygia guttata
ENSTGUG00000008837
I
ENSTSYG00000003356
Tarsius syrichta
ENSTSYG00000003356
I
ENSXMAG00000009162
Xiphophorus maculatus
ENSXMAG00000009162
I
ENSXMAG00000009164
Xiphophorus maculatus
ENSXMAG00000009164
I
ENSXMAG00000010995
Xiphophorus maculatus
ENSXMAG00000010995
I
ENSXMAG00000010996
Xiphophorus maculatus
ENSXMAG00000010996
I
ENSXMAG00000013404
Xiphophorus maculatus
ENSXMAG00000013404
I
estExt_gwp.C_400285
Branchiostoma floridae
estExt_gwp.C_400285
I
Gfo_R005436
Geospiza fortis
Gfo_R005436
I
Gfo_R015355
Geospiza fortis
Gfo_R015355
I
L798_08424
Zootermopsis nevadensis
L798_08424
I
LotgiG193238
Lottia gigantea
LotgiG193238
I
Myotis_brandtii_PCCA_10007322
Myotis brandtii
Myotis_brandtii_PCCA_10007322
I
Myotis_brandtii_ZIC1_10009541
Myotis brandtii
Myotis_brandtii_ZIC1_10009541
I
Myotis_brandtii_ZIC3_10005513
Myotis brandtii
Myotis_brandtii_ZIC3_10005513
I
Myotis_brandtii_Zic4_10009542
Myotis brandtii
Myotis_brandtii_Zic4_10009542
I
Ogr05309
Ophisaurus gracilis
Ogr05309
I
Ogr15027
Ophisaurus gracilis
Ogr15027
I
Ogr15030
Ophisaurus gracilis
Ogr15030
I
Ogr17255
Ophisaurus gracilis
Ogr17255
I
PHUM303860
Pediculus humanus
PHUM303860
I
Pvit_01478
Pogona vitticeps
Pvit_01478
I
Pvit_01479
Pogona vitticeps
Pvit_01479
I
Pvit_14047
Pogona vitticeps
Pvit_14047
I
SMAR005380
Strigamia maritima
SMAR005380
I
SPU_028583
Strongylocentrotus purpuratus
SPU_028583
I
SPU_030070
Strongylocentrotus purpuratus
SPU_030070
I
XP_002937379
Xenopus tropicalis
XP_002937379
I
ZIC1
Anolis carolinensis
ENSACAG00000006947
I
ZIC1
Bos taurus
ENSBTAG00000014751
I
ZIC1
Callithrix jacchus
ENSCJAG00000001524
I
zic1
Danio rerio
ENSDARG00000015567
I
ZIC1
Dasypus novemcinctus
ENSDNOG00000047101
I
ZIC1
Equus caballus
ENSECAG00000020355
I
ZIC1
Felis catus
ENSFCAG00000007061
I
ZIC1
Homo sapiens
ENSG00000152977
D
zic1
Gasterosteus aculeatus
ENSGACG00000003678
I
ZIC1
Gorilla gorilla
ENSGGOG00000001101
I
ZIC1
Loxodonta africana
ENSLAFG00000030632
I
ZIC1
Microcebus murinus
ENSMICG00000014401
I
ZIC1
Macaca mulatta
ENSMMUG00000004742
I
Zic1
Mus musculus
ENSMUSG00000032368
D
ZIC1
Otolemur garnettii
ENSOGAG00000007465
I
zic1
Oryzias latipes
ENSORLG00000010050
I
ZIC1
Pan troglodytes
ENSPTRG00000015501
I
Zic1
Rattus norvegicus
ENSRNOG00000014644
I
ZIC1
Sus scrofa
ENSSSCG00000011692
I
ZIC1
Taeniopygia guttata
ENSTGUG00000008838
I
zic1
Tetraodon nigroviridis
ENSTNIG00000012758
I
zic1
Takifugu rubripes
ENSTRUG00000017760
I
ZIC1
Tursiops truncatus
ENSTTRG00000014350
I
zic1.S
Xenopus laevis
XB-GENE-864815
I
ZIC2
Bos taurus
ENSBTAG00000025246
I
ZIC2
Canis familiaris
ENSCAFG00000005835
I
ZIC2
Callithrix jacchus
ENSCJAG00000020988
I
ZIC2
Cavia porcellus
ENSCPOG00000026926
I
ZIC2
Dasypus novemcinctus
ENSDNOG00000043170
I
ZIC2
Equus caballus
ENSECAG00000018593
I
ZIC2
Erinaceus europaeus
ENSEEUG00000013747
I
ZIC2
Echinops telfairi
ENSETEG00000007329
I
ZIC2
Homo sapiens
ENSG00000043355
D
ZIC2
Gorilla gorilla
ENSGGOG00000006512
I
ZIC2
Loxodonta africana
ENSLAFG00000008431
I
ZIC2
Microcebus murinus
ENSMICG00000015310
I
ZIC2
Myotis lucifugus
ENSMLUG00000003412
I
ZIC2
Macaca mulatta
ENSMMUG00000014822
I
ZIC2
Monodelphis domestica
ENSMODG00000007718
I
Zic2
Mus musculus
ENSMUSG00000061524
D
ZIC2
Otolemur garnettii
ENSOGAG00000025901
I
ZIC2
Pan troglodytes
ENSPTRG00000006000
I
Zic2
Rattus norvegicus
ENSRNOG00000054879
I
ZIC2
Sus scrofa
ENSSSCG00000009520
I
ZIC2
Tursiops truncatus
ENSTTRG00000002568
I
zic2.L
Xenopus laevis
XB-GENE-482658
I
zic2.S
Xenopus laevis
XB-GENE-6251643
I
zic2a
Danio rerio
ENSDARG00000015554
I
zic2b
Danio rerio
ENSDARG00000037178
I
zic2b
Gasterosteus aculeatus
ENSGACG00000001901
I
zic2b
Oryzias latipes
ENSORLG00000011117
I
zic2b
Tetraodon nigroviridis
ENSTNIG00000014979
I
ZIC3
Bos taurus
ENSBTAG00000021413
I
ZIC3
Canis familiaris
ENSCAFG00000018979
I
ZIC3
Callithrix jacchus
ENSCJAG00000013792
I
zic3
Danio rerio
ENSDARG00000071497
I
ZIC3
Dasypus novemcinctus
ENSDNOG00000006192
I
ZIC3
Equus caballus
ENSECAG00000013318
I
ZIC3
Echinops telfairi
ENSETEG00000018846
I
ZIC3
Felis catus
ENSFCAG00000025684
I
ZIC3
Homo sapiens
ENSG00000156925
D
zic3
Gasterosteus aculeatus
ENSGACG00000017212
I
ZIC3
Gorilla gorilla
ENSGGOG00000011914
I
ZIC3
Loxodonta africana
ENSLAFG00000007048
I
ZIC3
Myotis lucifugus
ENSMLUG00000011691
I
ZIC3
Monodelphis domestica
ENSMODG00000014029
I
Zic3
Mus musculus
ENSMUSG00000067860
D
ZIC3
Oryctolagus cuniculus
ENSOCUG00000009358
I
ZIC3
Otolemur garnettii
ENSOGAG00000011700
I
zic3
Oryzias latipes
ENSORLG00000001654
I
ZIC3
Pteropus vampyrus
ENSPVAG00000011652
I
Zic3
Rattus norvegicus
ENSRNOG00000000861
I
ZIC3
Sorex araneus
ENSSARG00000012492
I
ZIC3
Sus scrofa
ENSSSCG00000012705
I
ZIC3
Taeniopygia guttata
ENSTGUG00000002155
I
zic3
Tetraodon nigroviridis
ENSTNIG00000016841
I
zic3
Takifugu rubripes
ENSTRUG00000003550
I
zic3
Xenopus tropicalis
XB-GENE-480431
I
zic3.S
Xenopus laevis
XB-GENE-865376
I
ZIC4
Bos taurus
ENSBTAG00000014749
I
ZIC4
Canis familiaris
ENSCAFG00000008194
I
ZIC4
Cavia porcellus
ENSCPOG00000010981
I
zic4
Danio rerio
ENSDARG00000031307
I
ZIC4
Dasypus novemcinctus
ENSDNOG00000001881
I
ZIC4
Equus caballus
ENSECAG00000020070
I
ZIC4
Erinaceus europaeus
ENSEEUG00000000251
I
ZIC4
Felis catus
ENSFCAG00000007059
I
ZIC4
Homo sapiens
ENSG00000174963
D
zic4
Gasterosteus aculeatus
ENSGACG00000003685
I
ZIC4
Gorilla gorilla
ENSGGOG00000008924
I
ZIC4
Microcebus murinus
ENSMICG00000014391
I
ZIC4
Macaca mulatta
ENSMMUG00000004741
I
Zic4
Mus musculus
ENSMUSG00000036972
I
ZIC4
Ornithorhynchus anatinus
ENSOANG00000007364
I
ZIC4
Oryctolagus cuniculus
ENSOCUG00000010959
I
ZIC4
Otolemur garnettii
ENSOGAG00000007463
I
zic4
Oryzias latipes
ENSORLG00000010055
I
ZIC4
Procavia capensis
ENSPCAG00000008210
I
ZIC4
Pan troglodytes
ENSPTRG00000015500
I
ZIC4
Pteropus vampyrus
ENSPVAG00000003870
I
Zic4
Rattus norvegicus
ENSRNOG00000014871
I
ZIC4
Sus scrofa
ENSSSCG00000011693
I
zic4
Tetraodon nigroviridis
ENSTNIG00000012759
I
zic4
Takifugu rubripes
ENSTRUG00000017765
I
ZIC4
Tursiops truncatus
ENSTTRG00000014343
I
zic4
Xenopus tropicalis
XB-GENE-1033015
I
zic4.L
Xenopus laevis
XB-GENE-1033019
I
zic5
Danio rerio
ENSDARG00000016022
I
zic5
Oryzias latipes
ENSORLG00000011124
I
zic5
Xenopus tropicalis
XB-GENE-480775
I
zic5.S
Xenopus laevis
XB-GENE-865408
I