CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BRC1
(
Arabidopsis thaliana
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
AT3G18550
T343688_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TB1
M01312_2.00
Oryza sativa
GGSCCCCCYM
KRGGGGGSCC
PBM
Lambert et al.(2019)
pTH8740
0.828
0.405
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT3G18550.1
TCP
146
308
PSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIATTLSHHGCFSSGDESHIRPVLGSMDTSSDLCELASMWTVDDRGSNTNTTETRGNKVDGRSMRGKRKRPEPRTPILKKLSKEERAKARERAKGRTMEKMMMK
AT3G18550.2
TCP
146
304
PSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIATTLSHHGCFSSGDESHIRSMDTSSDLCELASMWTVDDRGSNTNTTETRGNKVDGRSMRGKRKRPEPRTPILKKLSKEERAKARERAKGRTMEKMMMK
AT3G18550.3
TCP
146
308
PSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIATTLSHHGCFSSGDESHIRPVLGSMDTSSDLCELASMWTVDDRGSNTNTTETRGNKVDGRSMRGKRKRPEPRTPILKKLSKEERAKARERAKGRTMEKMMMK
AT3G18550.4
TCP
146
308
PSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIATTLSHHGCFSSGDESHIRPVLGSMDTSSDLCELASMWTVDDRGSNTNTTETRGNKVDGRSMRGKRKRPEPRTPILKKLSKEERAKARERAKGRTMEKMMMK
Links
Other
TCP
family TFs
Other
Arabidopsis thaliana
TFs
71 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra001710
Brassica rapa
Bra001710
I
0.976
BRC1
Arabidopsis lyrata
scaffold_302193.1
N
0.976
Cagra.1681s0023
Capsella grandiflora
Cagra.1681s0023
I
0.975
Carubv10013748m.g
Capsella rubella
Carubv10013748m.g
I
0.975
Bostr.19424s0807
Boechera stricta
Bostr.19424s0807
I
0.974
Thhalv10021948m.g
Eutrema salsugineum
Thhalv10021948m.g
N
0.973
Bo5g117410
Brassica oleracea
Bo5g117410
N
0.970
Bo3g071560
Brassica oleracea
Bo3g071560
I
0.967
Bo1g117490
Brassica oleracea
Bo1g117490
I
0.963
Bra037579
Brassica rapa
Bra037579
I
0.963
Cucsa.113660
Cucumis sativus
Cucsa.113660
N
0.883
GLYMA17G13065
Glycine max
GLYMA17G13065
I
0.878
TCM_012252
Theobroma cacao
TCM_012252
I
0.877
evm.TU.supercontig_13.48
Carica papaya
evm.TU.supercontig_13.48
N
0.874
30174.m008721
Ricinus communis
30174.m008721
I
0.870
MTR_4g111935
Medicago truncatula
MTR_4g111935
I
0.867
Gorai.007G007500
Gossypium raimondii
Gorai.007G007500
I
0.866
Cla019282
Citrullus lanatus
Cla019282
N
0.863
Cucsa.198860
Cucumis sativus
Cucsa.198860
N
0.863
GLYMA04G22407
Glycine max
GLYMA04G22407
I
0.861
chr4.LjB15O07.110.nc
Lotus japonicus
chr4.LjB15O07.110.nc
I
0.860
GLYMA06G23410
Glycine max
GLYMA06G23410
N
0.859
GLYMA05G07943
Glycine max
GLYMA05G07943
I
0.853
Ciclev10024246m.g
Citrus clementina
Ciclev10024246m.g
I
0.852
Gorai.008G285300
Gossypium raimondii
Gorai.008G285300
I
0.852
orange1.1g035911m.g
Citrus sinensis
orange1.1g035911m.g
I
0.852
MDP0000224810
Malus domestica
MDP0000224810
N
0.851
cassava32886.m1
Manihot esculenta
cassava32886.m1
I
0.850
GRMZM2G064628
Zea mays
GRMZM2G064628
I
0.849
F775_01923
Aegilops tauschii
F775_01923
I
0.848
Cla018797
Citrullus lanatus
Cla018797
N
0.848
Si015230m.g
Setaria italica
Si015230m.g
I
0.845
GRMZM2G055024
Zea mays
GRMZM2G055024
I
0.842
cassava9378.m1
Manihot esculenta
cassava9378.m1
I
0.842
Sb02g024450
Sorghum bicolor
Sb02g024450
I
0.839
Eucgr.B00699
Eucalyptus grandis
Eucgr.B00699
I
0.837
POPTR_0015s03140
Populus trichocarpa
POPTR_0015s03140
I
0.835
SapurV1A.0301s0010
Salix purpurea
SapurV1A.0301s0010
I
0.835
LPERR03G25950
Leersia perrieri
LPERR03G25950
I
0.834
LPERR09G06870
Leersia perrieri
LPERR09G06870
I
0.834
SapurV1A.1895s0010
Salix purpurea
SapurV1A.1895s0010
I
0.834
SapurV1A.1895s0020
Salix purpurea
SapurV1A.1895s0020
I
0.834
MDP0000219838
Malus domestica
MDP0000219838
N
0.833
Pavir.Ib04362
Panicum virgatum
Pavir.Ib04362
I
0.833
SapurV1A.0583s0060
Salix purpurea
SapurV1A.0583s0060
I
0.832
Eucgr.K02654
Eucalyptus grandis
Eucgr.K02654
I
0.831
BGIOSGA030744
Oryza indica
BGIOSGA030744
I
0.830
OBART09G10040
Oryza barthii
OBART09G10040
I
0.830
OGLUM09G10300
Oryza glumaepatula
OGLUM09G10300
I
0.830
ONIVA09G09540
Oryza nivara
ONIVA09G09540
I
0.830
ORUFI09G10660
Oryza rufipogon
ORUFI09G10660
I
0.830
OS09G0410500
Oryza sativa
OS09G0410500
I
0.830
OBART03G31290
Oryza barthii
OBART03G31290
I
0.829
ORGLA03G0289500
Oryza glaberrima
ORGLA03G0289500
I
0.829
Pavir.Ia00838
Panicum virgatum
Pavir.Ia00838
I
0.829
BGIOSGA013417
Oryza indica
BGIOSGA013417
I
0.828
OGLUM03G31540
Oryza glumaepatula
OGLUM03G31540
I
0.828
ONIVA03G32600
Oryza nivara
ONIVA03G32600
I
0.828
ORUFI03G32570
Oryza rufipogon
ORUFI03G32570
I
0.828
TB1
Oryza sativa
OS03G0706500
D
0.828
POPTR_0012s05660
Populus trichocarpa
POPTR_0012s05660
I
0.828
OPUNC09G08520
Oryza punctata
OPUNC09G08520
I
0.827
LjSGA_018294.2
Lotus japonicus
LjSGA_018294.2
I
0.827
GRMZM2G060319
Zea mays
GRMZM2G060319
I
0.826
Si038692m.g
Setaria italica
Si038692m.g
I
0.826
Pavir.Fa00870
Panicum virgatum
Pavir.Fa00870
I
0.826
Sb01g010690
Sorghum bicolor
Sb01g010690
I
0.825
OMERI03G27910
Oryza meridionalis
OMERI03G27910
I
0.824
OMERI08G12900
Oryza meridionalis
OMERI08G12900
I
0.824
Pavir.Fb01590
Panicum virgatum
Pavir.Fb01590
I
0.824