BRC2 (Arabidopsis lyrata)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 fgenesh1_pm.C_scaffold_2000933 T343835_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.956 0.523
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.872 0.453
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.866 0.422
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_2000933 TCP 110 237

Links

Other TCP family TFs
Other Arabidopsis lyrata TFs

133 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRC2 Arabidopsis thaliana AT1G68800 I 0.980
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.977
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.977
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.977
PK12240.1 Cannabis sativa PK12240.1 D 0.956
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.948
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.946
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.941
MDP0000272980 Malus domestica MDP0000272980 I 0.941
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.938
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.936
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.935
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.933
30167.m000856 Ricinus communis 30167.m000856 I 0.932
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.931
MDP0000173048 Malus domestica MDP0000173048 I 0.929
Cla002355 Citrullus lanatus Cla002355 I 0.928
Bo2g061250 Brassica oleracea Bo2g061250 I 0.926
Bra038350 Brassica rapa Bra038350 I 0.926
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.925
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.923
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.923
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.922
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.920
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.920
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.917
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.917
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.917
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.917
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.916
Pm029002 Prunus mume Pm029002 I 0.916
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.916
TCM_011874 Theobroma cacao TCM_011874 I 0.914
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.913
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.913
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.912
mgf024687m Mimulus guttatus mgf024687m I 0.912
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.911
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.911
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.910
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.910
29738.m001041 Ricinus communis 29738.m001041 I 0.910
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.910
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.909
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.909
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.906
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.906
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.904
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.904
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.903
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.902
Bra004097 Brassica rapa Bra004097 I 0.900
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.899
mgf019480m Mimulus guttatus mgf019480m I 0.897
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.896
mgf026636m Mimulus guttatus mgf026636m I 0.894
Cla016709 Citrullus lanatus Cla016709 I 0.893
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.891
GRMZM2G031905 Zea mays GRMZM2G031905 I 0.891
Bo6g103670 Brassica oleracea Bo6g103670 I 0.890
TCM_019518 Theobroma cacao TCM_019518 I 0.889
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.888
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.888
Bra004212 Brassica rapa Bra004212 I 0.887
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.886
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.885
Cla007227 Citrullus lanatus Cla007227 I 0.884
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.883
mgf022233m Mimulus guttatus mgf022233m I 0.879
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.879
GRMZM2G062711 Zea mays GRMZM2G062711 I 0.878
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.878
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.878
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.875
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.874
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.874
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.872
PK19717.1 Cannabis sativa PK19717.1 D 0.872
Sb01g010690 Sorghum bicolor Sb01g010690 I 0.871
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I 0.871
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I 0.871
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I 0.871
TRIUR3_31795 Triticum urartu TRIUR3_31795 I 0.871
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.870
Pm015499 Prunus mume Pm015499 I 0.869
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.868
TCM_012252 Theobroma cacao TCM_012252 I 0.867
TCP1 Arabidopsis thaliana AT1G67260 D 0.866
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.866
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.864
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.863
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.862
Pm030202 Prunus mume Pm030202 I 0.862
AC233950.1_FG002 Zea mays AC233950.1_FG002 I 0.859
Bo6g099040 Brassica oleracea Bo6g099040 I 0.858
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.855
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.855
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.854
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.854
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.853
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.853
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.852
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.851
PDK_20s1689851g001 Phoenix dactylifera PDK_20s1689851g001 I 0.847
30174.m008721 Ricinus communis 30174.m008721 I 0.846
GSMUA_Achr10G25520_001 Musa acuminata GSMUA_Achr10G25520_001 I 0.845
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.844
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.844
OPUNC03G28490 Oryza punctata OPUNC03G28490 I 0.843
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.843
MDP0000224810 Malus domestica MDP0000224810 N 0.840
Bra034010 Brassica rapa Bra034010 I 0.838
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.838
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.838
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.837
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.837
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.837
SELMODRAFT_7330 Selaginella moellendorffii SELMODRAFT_7330 I 0.836
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.836
LjSGA_018294.2 Lotus japonicus LjSGA_018294.2 I 0.836
Bo2g055640 Brassica oleracea Bo2g055640 I 0.834
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.834
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.834
Si033183m.g Setaria italica Si033183m.g I 0.833
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I 0.833
AC190734.2_FG003 Zea mays AC190734.2_FG003 I 0.831
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.831
BRADI1G11060 Brachypodium distachyon BRADI1G11060 I 0.829
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.829
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.829
Solyc03g045030.1 Solanum lycopersicum Solyc03g045030.1 I 0.829
Cla019282 Citrullus lanatus Cla019282 N 0.822
evm.TU.supercontig_13.48 Carica papaya evm.TU.supercontig_13.48 N 0.822