CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GLYMA05G07943
(
Glycine max
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
GLYMA05G07943
T343861_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS
SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.850
0.397
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLYMA05G07943.1
TCP
118
263
SSKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKGEIKQLGREKTSVGGAKSASSTSECEGVSSLDEVVVSGGVNEEQERETVPNMKRRTNKVCRKSAFNPIDKESREKARERARERTREKMRTR
Links
Other
TCP
family TFs
Other
Glycine max
TFs
103 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F443_04774
Phytophthora parasitica
F443_04774
N
fgenesh_scip_prom.28083.8606
Phytophthora lateralis
fgenesh_scip_prom.28083.8606
N
maker-pag1_scaffold_419-snap-gene-0.16
Pythium aphanidermatum
maker-pag1_scaffold_419-snap-gene-0.16
N
maker-par_contig_744-snap-gene-0.10
Pythium arrhenomanes
maker-par_contig_744-snap-gene-0.10
N
maker-pir_contig_1252-snap-gene-0.4
Pythium irregulare
maker-pir_contig_1252-snap-gene-0.4
N
maker-piw_contig_1130-snap-gene-0.10
Pythium iwayamai
maker-piw_contig_1130-snap-gene-0.10
N
maker-pve_contig_41-fgenesh-gene-0.12
Pythium vexans
maker-pve_contig_41-fgenesh-gene-0.12
N
Phyra78585
Phytophthora ramorum
Phyra78585
N
PYU1_G014720
Pythium ultimum
PYU1_G014720
N
SPRG_13270
Saprolegnia parasitica
SPRG_13270
N