GLYMA20G28670 (Glycine max)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 GLYMA20G28670 T343905_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.902 0.439
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.852 0.381
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.842 0.460
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA20G28670.1 TCP 105 243

Links

Other TCP family TFs
Other Glycine max TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.974
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.946
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.943
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.940
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.939
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.931
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.929
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.929
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.926
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.923
mgf019480m Mimulus guttatus mgf019480m I 0.916
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.915
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.914
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.914
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.914
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.908
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.903
PK12240.1 Cannabis sativa PK12240.1 D 0.902
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.901
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.898
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.895
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.895
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.894
mgf022233m Mimulus guttatus mgf022233m I 0.892
BRC2 Arabidopsis thaliana AT1G68800 I 0.891
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.891
29738.m001041 Ricinus communis 29738.m001041 I 0.889
Bra004212 Brassica rapa Bra004212 I 0.888
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.887
Cla007227 Citrullus lanatus Cla007227 I 0.887
Cla016709 Citrullus lanatus Cla016709 I 0.887
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.885
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.880
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.878
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.878
MDP0000173048 Malus domestica MDP0000173048 I 0.876
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.875
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.875
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.875
Bra004097 Brassica rapa Bra004097 I 0.871
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.871
Bo6g103670 Brassica oleracea Bo6g103670 I 0.870
Cla002355 Citrullus lanatus Cla002355 I 0.870
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.867
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.866
TCM_011874 Theobroma cacao TCM_011874 I 0.866
30167.m000856 Ricinus communis 30167.m000856 I 0.866
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.866
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.865
TCM_019518 Theobroma cacao TCM_019518 I 0.863
Bra034010 Brassica rapa Bra034010 I 0.861
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.861
Bo6g099040 Brassica oleracea Bo6g099040 I 0.859
Bo2g061250 Brassica oleracea Bo2g061250 I 0.855
Bra038350 Brassica rapa Bra038350 I 0.855
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.855
Pm029002 Prunus mume Pm029002 I 0.855
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.855
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.853
TCP1 Arabidopsis thaliana AT1G67260 D 0.852
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.852
Bo2g055640 Brassica oleracea Bo2g055640 I 0.850
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.850
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.847
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.845
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.844
mgf026636m Mimulus guttatus mgf026636m I 0.843
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.843
PK19717.1 Cannabis sativa PK19717.1 D 0.842
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.841
MDP0000272980 Malus domestica MDP0000272980 I 0.840
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.838
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.838
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.833
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.830
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.824