CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GRMZM2G055024
(
Zea mays
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
GRMZM2G055024
T343914_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TB1
M01312_2.00
Oryza sativa
GGSCCCCCYM
KRGGGGGSCC
PBM
Lambert et al.(2019)
pTH8740
0.832
0.323
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G055024_P01
TCP
146
414
PFRTDWHSKIRTAQGVRDRRMRLSVGVAREFFALQDRLGFDKASKTVNWLLAQSKPAIDRLNRARLGSERQFVAPPNRTRPEQFIAPHGLSKRAVSAEEEVAGVAARKGCVRQTGGDADETKKVTFVEVGGDVPLKLSRRNSLAAHVPVTRSRRNSLGADVLVRQSSRNSLCAEAQDCELRSQVTCSPVVAKPRGKSVQAGSVEVGAVVPLRRSRRNSLRAAESEEVQVVVFVDRKRKCKNQENDKGVALSAQVGASSRVTRRSSHALS
Links
Other
TCP
family TFs
Other
Zea mays
TFs
105 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Si015230m.g
Setaria italica
Si015230m.g
I
0.950
GRMZM2G166687
Zea mays
GRMZM2G166687
I
0.948
GRMZM2G060319
Zea mays
GRMZM2G060319
I
0.946
Sb07g021140
Sorghum bicolor
Sb07g021140
I
0.946
F775_01923
Aegilops tauschii
F775_01923
I
0.944
AC234521.1_FG006
Zea mays
AC234521.1_FG006
N
0.942
Pavir.Fb01590
Panicum virgatum
Pavir.Fb01590
I
0.942
Pavir.Fa00870
Panicum virgatum
Pavir.Fa00870
I
0.937
MLOC_58142
Hordeum vulgare
MLOC_58142
I
0.932
LPERR09G06870
Leersia perrieri
LPERR09G06870
I
0.930
OMERI09G07770
Oryza meridionalis
OMERI09G07770
I
0.925
Pavir.Bb02154
Panicum virgatum
Pavir.Bb02154
I
0.925
BGIOSGA030744
Oryza indica
BGIOSGA030744
I
0.924
OBART09G10040
Oryza barthii
OBART09G10040
I
0.924
OGLUM09G10300
Oryza glumaepatula
OGLUM09G10300
I
0.924
ONIVA09G09540
Oryza nivara
ONIVA09G09540
I
0.924
ORUFI09G10660
Oryza rufipogon
ORUFI09G10660
I
0.924
OS09G0410500
Oryza sativa
OS09G0410500
I
0.924
GRMZM2G064628
Zea mays
GRMZM2G064628
I
0.923
OPUNC09G08520
Oryza punctata
OPUNC09G08520
I
0.922
Sb02g024450
Sorghum bicolor
Sb02g024450
I
0.921
Si033183m.g
Setaria italica
Si033183m.g
I
0.921
Traes_5BL_19F383CC71
Triticum aestivum
Traes_5BL_19F383CC71
I
0.921
TRIUR3_20728
Triticum urartu
TRIUR3_20728
I
0.921
Pavir.Ba01820
Panicum virgatum
Pavir.Ba01820
I
0.920
GRMZM2G110242
Zea mays
GRMZM2G110242
I
0.919
OPUNC08G13710
Oryza punctata
OPUNC08G13710
I
0.916
MLOC_4614
Hordeum vulgare
MLOC_4614
I
0.915
Traes_5DL_46A3B0DAB1
Triticum aestivum
Traes_5DL_46A3B0DAB1
I
0.914
OMERI08G12900
Oryza meridionalis
OMERI08G12900
I
0.911
GRMZM2G031905
Zea mays
GRMZM2G031905
I
0.910
BRADI3G36590
Brachypodium distachyon
BRADI3G36590
N
0.909
BRADI4G29980
Brachypodium distachyon
BRADI4G29980
I
0.907
ORGLA08G0137200
Oryza glaberrima
ORGLA08G0137200
I
0.907
LPERR08G12880
Leersia perrieri
LPERR08G12880
I
0.905
GRMZM2G062711
Zea mays
GRMZM2G062711
I
0.904
OGLUM08G16380
Oryza glumaepatula
OGLUM08G16380
I
0.903
ONIVA08G16720
Oryza nivara
ONIVA08G16720
I
0.901
BGIOSGA028717
Oryza indica
BGIOSGA028717
I
0.894
ORUFI08G17540
Oryza rufipogon
ORUFI08G17540
I
0.894
OS08G0432300
Oryza sativa
OS08G0432300
I
0.894
30174.m008721
Ricinus communis
30174.m008721
I
0.877
GRMZM2G414114
Zea mays
GRMZM2G414114
N
0.876
GRMZM2G458087
Zea mays
GRMZM2G458087
N
0.876
OBART08G15630
Oryza barthii
OBART08G15630
N
0.874
cassava32886.m1
Manihot esculenta
cassava32886.m1
I
0.874
cassava9378.m1
Manihot esculenta
cassava9378.m1
I
0.872
POPTR_0015s03140
Populus trichocarpa
POPTR_0015s03140
I
0.871
SapurV1A.0583s0060
Salix purpurea
SapurV1A.0583s0060
I
0.865
POPTR_0012s05660
Populus trichocarpa
POPTR_0012s05660
I
0.860
Cagra.1681s0023
Capsella grandiflora
Cagra.1681s0023
I
0.851
Carubv10013748m.g
Capsella rubella
Carubv10013748m.g
I
0.851
Bostr.19424s0807
Boechera stricta
Bostr.19424s0807
I
0.848
TCM_019518
Theobroma cacao
TCM_019518
I
0.845
Eucgr.B00699
Eucalyptus grandis
Eucgr.B00699
I
0.845
Gorai.001G200400
Gossypium raimondii
Gorai.001G200400
I
0.845
BRC1
Arabidopsis thaliana
AT3G18550
I
0.842
PRUPE_ppa015026mg
Prunus persica
PRUPE_ppa015026mg
I
0.842
Pm030202
Prunus mume
Pm030202
I
0.842
PRUPE_ppa027156mg
Prunus persica
PRUPE_ppa027156mg
I
0.841
Pm015499
Prunus mume
Pm015499
I
0.841
Thhalv10021948m.g
Eutrema salsugineum
Thhalv10021948m.g
N
0.839
Pavir.Ib04362
Panicum virgatum
Pavir.Ib04362
I
0.838
SapurV1A.1895s0010
Salix purpurea
SapurV1A.1895s0010
I
0.838
SapurV1A.1895s0020
Salix purpurea
SapurV1A.1895s0020
I
0.838
Sb01g010690
Sorghum bicolor
Sb01g010690
I
0.837
Traes_4BS_DC076554D
Triticum aestivum
Traes_4BS_DC076554D
I
0.837
Bra037579
Brassica rapa
Bra037579
I
0.836
BRADI1G11060
Brachypodium distachyon
BRADI1G11060
I
0.836
Gorai.007G007500
Gossypium raimondii
Gorai.007G007500
I
0.836
GSMUA_Achr2G21050_001
Musa acuminata
GSMUA_Achr2G21050_001
I
0.835
LPERR03G25950
Leersia perrieri
LPERR03G25950
I
0.835
MDP0000224810
Malus domestica
MDP0000224810
N
0.835
Bo3g071560
Brassica oleracea
Bo3g071560
I
0.834
Bra001710
Brassica rapa
Bra001710
I
0.834
MLOC_70116
Hordeum vulgare
MLOC_70116
I
0.834
Si038692m.g
Setaria italica
Si038692m.g
I
0.834
Traes_2DS_4C8E5F416
Triticum aestivum
Traes_2DS_4C8E5F416
N
0.834
Traes_4AL_75D069945
Triticum aestivum
Traes_4AL_75D069945
I
0.834
Traes_4DS_59A46B69A
Triticum aestivum
Traes_4DS_59A46B69A
I
0.834
TRIUR3_31795
Triticum urartu
TRIUR3_31795
I
0.834
Bo5g117410
Brassica oleracea
Bo5g117410
N
0.833
Cla019282
Citrullus lanatus
Cla019282
N
0.833
Gorai.008G285300
Gossypium raimondii
Gorai.008G285300
I
0.833
Pavir.Ia00838
Panicum virgatum
Pavir.Ia00838
I
0.833
SapurV1A.0301s0010
Salix purpurea
SapurV1A.0301s0010
I
0.833
BGIOSGA013417
Oryza indica
BGIOSGA013417
I
0.832
OGLUM03G31540
Oryza glumaepatula
OGLUM03G31540
I
0.832
OMERI03G27910
Oryza meridionalis
OMERI03G27910
I
0.832
ONIVA03G32600
Oryza nivara
ONIVA03G32600
I
0.832
ORUFI03G32570
Oryza rufipogon
ORUFI03G32570
I
0.832
TB1
Oryza sativa
OS03G0706500
D
0.832
Eucgr.K02654
Eucalyptus grandis
Eucgr.K02654
I
0.832
Bo1g117490
Brassica oleracea
Bo1g117490
I
0.830
Cla018797
Citrullus lanatus
Cla018797
N
0.830
AC233950.1_FG002
Zea mays
AC233950.1_FG002
I
0.829
OBART03G31290
Oryza barthii
OBART03G31290
I
0.829
ORGLA03G0289500
Oryza glaberrima
ORGLA03G0289500
I
0.829
BRC1
Arabidopsis lyrata
scaffold_302193.1
N
0.826
OPUNC03G28490
Oryza punctata
OPUNC03G28490
I
0.825
Solyc06g069240.1
Solanum lycopersicum
Solyc06g069240.1
N
0.825
TCM_012252
Theobroma cacao
TCM_012252
I
0.825
Aquca_002_01093
Aquilegia coerulea
Aquca_002_01093
I
0.825
Thhalv10019499m.g
Eutrema salsugineum
Thhalv10019499m.g
I
0.825
Cla016709
Citrullus lanatus
Cla016709
I
0.824