CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GSMUA_Achr10G25520_001
(
Musa acuminata
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
GSMUA_Achr10G25520_001
T343950_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TB1
M01312_2.00
Oryza sativa
GGSCCCCCYM
KRGGGGGSCC
PBM
Lambert et al.(2019)
pTH8740
0.843
0.447
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS
SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.842
0.368
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSMUA_Achr10P25520_001
TCP
86
237
SWRNDRNSKILTAKGPRDRRIRLSNEVARKFFDLQDMLGFDQGSKTVQWLFNMSKHAIQELTAISDPQLGGLGIQSPASFTLGLEKSTMESDSQGKSTTKLVTATSVKNSKNEKQLIKPSGNAGSNLMRARESRAKARARARERTTEKRRMW
Links
Other
TCP
family TFs
Other
Musa acuminata
TFs
54 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ciclev10024246m.g
Citrus clementina
Ciclev10024246m.g
I
0.878
orange1.1g035911m.g
Citrus sinensis
orange1.1g035911m.g
I
0.878
evm.TU.supercontig_1401.1
Carica papaya
evm.TU.supercontig_1401.1
I
0.873
Lus10035055.g
Linum usitatissimum
Lus10035055.g
I
0.867
BRADI1G11060
Brachypodium distachyon
BRADI1G11060
I
0.857
POPTR_0008s11470
Populus trichocarpa
POPTR_0008s11470
I
0.851
POPTR_0010s14030
Populus trichocarpa
POPTR_0010s14030
I
0.851
GSMUA_Achr2G21050_001
Musa acuminata
GSMUA_Achr2G21050_001
I
0.850
Sb01g010690
Sorghum bicolor
Sb01g010690
I
0.850
cassava16230.m1
Manihot esculenta
cassava16230.m1
I
0.850
TCM_011874
Theobroma cacao
TCM_011874
I
0.847
29738.m001041
Ricinus communis
29738.m001041
I
0.846
Gorai.008G186800
Gossypium raimondii
Gorai.008G186800
I
0.846
BRC2
Arabidopsis thaliana
AT1G68800
I
0.845
BRC2
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_2000933
I
0.845
GSMUA_Achr2G22480_001
Musa acuminata
GSMUA_Achr2G22480_001
I
0.845
SapurV1A.0304s0080
Salix purpurea
SapurV1A.0304s0080
I
0.845
BGIOSGA013417
Oryza indica
BGIOSGA013417
I
0.843
OGLUM03G31540
Oryza glumaepatula
OGLUM03G31540
I
0.843
ONIVA03G32600
Oryza nivara
ONIVA03G32600
I
0.843
ORUFI03G32570
Oryza rufipogon
ORUFI03G32570
I
0.843
TB1
Oryza sativa
OS03G0706500
D
0.843
Lus10021713.g
Linum usitatissimum
Lus10021713.g
I
0.843
LPERR03G25950
Leersia perrieri
LPERR03G25950
I
0.842
Pavir.Ia00838
Panicum virgatum
Pavir.Ia00838
I
0.842
PK12240.1
Cannabis sativa
PK12240.1
D
0.842
Cucsa.280880
Cucumis sativus
Cucsa.280880
I
0.841
gene03882-v1.0-hybrid
Fragaria vesca
gene03882-v1.0-hybrid
I
0.839
AC233950.1_FG002
Zea mays
AC233950.1_FG002
I
0.838
PRUPE_ppa016240mg
Prunus persica
PRUPE_ppa016240mg
I
0.837
Pm029002
Prunus mume
Pm029002
I
0.837
MLOC_70116
Hordeum vulgare
MLOC_70116
I
0.836
Traes_4AL_75D069945
Triticum aestivum
Traes_4AL_75D069945
I
0.836
Traes_4BS_DC076554D
Triticum aestivum
Traes_4BS_DC076554D
I
0.836
Traes_4DS_59A46B69A
Triticum aestivum
Traes_4DS_59A46B69A
I
0.836
TRIUR3_31795
Triticum urartu
TRIUR3_31795
I
0.836
Pavir.Ib04362
Panicum virgatum
Pavir.Ib04362
I
0.833
mgf024687m
Mimulus guttatus
mgf024687m
I
0.832
SapurV1A.0583s0060
Salix purpurea
SapurV1A.0583s0060
I
0.832
OBART03G31290
Oryza barthii
OBART03G31290
I
0.831
OMERI03G27910
Oryza meridionalis
OMERI03G27910
I
0.831
ORGLA03G0289500
Oryza glaberrima
ORGLA03G0289500
I
0.831
POPTR_0012s05660
Populus trichocarpa
POPTR_0012s05660
I
0.831
SapurV1A.0682s0140
Salix purpurea
SapurV1A.0682s0140
I
0.831
Si038692m.g
Setaria italica
Si038692m.g
I
0.830
MDP0000272980
Malus domestica
MDP0000272980
I
0.829
PGSC0003DMG400003362
Solanum tuberosum
PGSC0003DMG400003362
I
0.827
Eucgr.B00699
Eucalyptus grandis
Eucgr.B00699
I
0.827
Solyc03g045030.1
Solanum lycopersicum
Solyc03g045030.1
I
0.826
Bostr.26959s0002
Boechera stricta
Bostr.26959s0002
I
0.825
Cagra.1157s0001
Capsella grandiflora
Cagra.1157s0001
I
0.825
Carubv10020487m.g
Capsella rubella
Carubv10020487m.g
I
0.825
OPUNC03G28490
Oryza punctata
OPUNC03G28490
I
0.823
MDP0000173048
Malus domestica
MDP0000173048
I
0.823