CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GSMUA_Achr2G21050_001
(
Musa acuminata
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
GSMUA_Achr2G21050_001
T343959_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TB1
M01312_2.00
Oryza sativa
GGSCCCCCYM
KRGGGGGSCC
PBM
Lambert et al.(2019)
pTH8740
0.853
0.474
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSMUA_Achr2P21050_001
TCP
34
187
ALRKCRHSKIVTANGPRDRRMRLSIDVARSFFRLQDTFDFDKASKTVQWLLTVSKAAIEELGTLSSAEHSGCSNRSPKSESSALVCQDSSAISSSKNKSSTVTAAAREVKKSKARKGGVKPSRKVEYHSALARESRAKARARARERTREKQRMT
Links
Other
TCP
family TFs
Other
Musa acuminata
TFs
81 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GSMUA_Achr2G22480_001
Musa acuminata
GSMUA_Achr2G22480_001
I
0.950
Sb01g010690
Sorghum bicolor
Sb01g010690
I
0.862
TRIUR3_20728
Triticum urartu
TRIUR3_20728
I
0.861
BRADI1G11060
Brachypodium distachyon
BRADI1G11060
I
0.856
MLOC_70116
Hordeum vulgare
MLOC_70116
I
0.855
Traes_4AL_75D069945
Triticum aestivum
Traes_4AL_75D069945
I
0.855
Traes_4BS_DC076554D
Triticum aestivum
Traes_4BS_DC076554D
I
0.855
Traes_4DS_59A46B69A
Triticum aestivum
Traes_4DS_59A46B69A
I
0.855
TRIUR3_31795
Triticum urartu
TRIUR3_31795
I
0.855
LPERR03G25950
Leersia perrieri
LPERR03G25950
I
0.854
BGIOSGA013417
Oryza indica
BGIOSGA013417
I
0.853
OGLUM03G31540
Oryza glumaepatula
OGLUM03G31540
I
0.853
ONIVA03G32600
Oryza nivara
ONIVA03G32600
I
0.853
ORUFI03G32570
Oryza rufipogon
ORUFI03G32570
I
0.853
TB1
Oryza sativa
OS03G0706500
D
0.853
PGSC0003DMG400004054
Solanum tuberosum
PGSC0003DMG400004054
N
0.852
OBART03G31290
Oryza barthii
OBART03G31290
I
0.851
OMERI03G27910
Oryza meridionalis
OMERI03G27910
I
0.851
ORGLA03G0289500
Oryza glaberrima
ORGLA03G0289500
I
0.851
Solyc06g069240.1
Solanum lycopersicum
Solyc06g069240.1
N
0.851
BRADI4G29980
Brachypodium distachyon
BRADI4G29980
I
0.850
GSMUA_Achr10G25520_001
Musa acuminata
GSMUA_Achr10G25520_001
I
0.850
SapurV1A.0583s0060
Salix purpurea
SapurV1A.0583s0060
I
0.850
LPERR08G12880
Leersia perrieri
LPERR08G12880
I
0.847
POPTR_0012s05660
Populus trichocarpa
POPTR_0012s05660
I
0.847
Pavir.Ia00838
Panicum virgatum
Pavir.Ia00838
I
0.847
Traes_5BL_19F383CC71
Triticum aestivum
Traes_5BL_19F383CC71
I
0.846
Gorai.007G007500
Gossypium raimondii
Gorai.007G007500
I
0.846
OPUNC08G13710
Oryza punctata
OPUNC08G13710
I
0.845
cassava32886.m1
Manihot esculenta
cassava32886.m1
I
0.845
Gorai.008G285300
Gossypium raimondii
Gorai.008G285300
I
0.844
MLOC_4614
Hordeum vulgare
MLOC_4614
I
0.843
Eucgr.B00699
Eucalyptus grandis
Eucgr.B00699
I
0.843
Pavir.Ib04362
Panicum virgatum
Pavir.Ib04362
I
0.843
cassava9378.m1
Manihot esculenta
cassava9378.m1
I
0.842
AC233950.1_FG002
Zea mays
AC233950.1_FG002
I
0.841
OMERI09G07770
Oryza meridionalis
OMERI09G07770
I
0.841
Si038692m.g
Setaria italica
Si038692m.g
I
0.841
OPUNC09G08520
Oryza punctata
OPUNC09G08520
I
0.840
Si033183m.g
Setaria italica
Si033183m.g
I
0.840
30174.m008721
Ricinus communis
30174.m008721
I
0.839
Pavir.Ba01820
Panicum virgatum
Pavir.Ba01820
I
0.839
GRMZM2G060319
Zea mays
GRMZM2G060319
I
0.837
Sb02g024450
Sorghum bicolor
Sb02g024450
I
0.837
Pavir.Bb02154
Panicum virgatum
Pavir.Bb02154
I
0.837
Pavir.Fa00870
Panicum virgatum
Pavir.Fa00870
I
0.836
GRMZM2G055024
Zea mays
GRMZM2G055024
I
0.835
LPERR09G06870
Leersia perrieri
LPERR09G06870
I
0.835
MDP0000224810
Malus domestica
MDP0000224810
N
0.835
F775_01923
Aegilops tauschii
F775_01923
I
0.834
GRMZM2G064628
Zea mays
GRMZM2G064628
I
0.834
OPUNC03G28490
Oryza punctata
OPUNC03G28490
I
0.834
POPTR_0015s03140
Populus trichocarpa
POPTR_0015s03140
I
0.834
MLOC_58142
Hordeum vulgare
MLOC_58142
I
0.833
GLYMA05G07943
Glycine max
GLYMA05G07943
I
0.832
Aquca_002_01093
Aquilegia coerulea
Aquca_002_01093
I
0.832
ONIVA08G16720
Oryza nivara
ONIVA08G16720
I
0.831
Traes_5DL_46A3B0DAB1
Triticum aestivum
Traes_5DL_46A3B0DAB1
I
0.831
Ciclev10024246m.g
Citrus clementina
Ciclev10024246m.g
I
0.830
orange1.1g035911m.g
Citrus sinensis
orange1.1g035911m.g
I
0.830
OMERI08G12900
Oryza meridionalis
OMERI08G12900
I
0.828
SapurV1A.0301s0010
Salix purpurea
SapurV1A.0301s0010
I
0.828
Thhalv10019499m.g
Eutrema salsugineum
Thhalv10019499m.g
I
0.828
BGIOSGA030744
Oryza indica
BGIOSGA030744
I
0.827
GRMZM2G110242
Zea mays
GRMZM2G110242
I
0.827
OBART09G10040
Oryza barthii
OBART09G10040
I
0.827
OGLUM09G10300
Oryza glumaepatula
OGLUM09G10300
I
0.827
ONIVA09G09540
Oryza nivara
ONIVA09G09540
I
0.827
ORUFI09G10660
Oryza rufipogon
ORUFI09G10660
I
0.827
OS09G0410500
Oryza sativa
OS09G0410500
I
0.827
Pm015499
Prunus mume
Pm015499
I
0.827
ORGLA08G0137200
Oryza glaberrima
ORGLA08G0137200
I
0.826
Ciclev10033382m.g
Citrus clementina
Ciclev10033382m.g
I
0.825
orange1.1g039323m.g
Citrus sinensis
orange1.1g039323m.g
I
0.825
PRUPE_ppa027156mg
Prunus persica
PRUPE_ppa027156mg
I
0.824
Pavir.Fb01590
Panicum virgatum
Pavir.Fb01590
I
0.824
BGIOSGA028717
Oryza indica
BGIOSGA028717
I
0.823
GRMZM2G166687
Zea mays
GRMZM2G166687
I
0.823
OGLUM08G16380
Oryza glumaepatula
OGLUM08G16380
I
0.823
ORUFI08G17540
Oryza rufipogon
ORUFI08G17540
I
0.823
OS08G0432300
Oryza sativa
OS08G0432300
I
0.823