CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MTR_1g103380
(
Medicago truncatula
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
MTR_1g103380
T344034_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS
SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.929
0.467
PK19717.1
M01318_2.00
Cannabis sativa
GGGSCCCMC
GKGGGSCCC
PBM
Lambert et al.(2019)
pTH10142
0.857
0.460
TCP1
M07276_2.00
Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY
Dap-seq
OMalley et al.(2016)
TCP1_col_a
0.834
0.409
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
KEH43846
TCP
199
335
GGKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSDTAIKELARTKNAACYNNNNNDNSPFFDSNSNKSFSGGGGGDGSCSSKGRKLKWTQKEETKKESRERARARARERTCYKMCSS
Links
Other
TCP
family TFs
Other
Medicago truncatula
TFs
84 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
chr5.CM0357.550.nc
Lotus japonicus
chr5.CM0357.550.nc
I
0.954
GLYMA10G39141
Glycine max
GLYMA10G39141
I
0.939
chr1.LjB10L14.10.nc
Lotus japonicus
chr1.LjB10L14.10.nc
I
0.932
GLYMA20G28670
Glycine max
GLYMA20G28670
I
0.929
PK12240.1
Cannabis sativa
PK12240.1
D
0.929
GLYMA18G51581
Glycine max
GLYMA18G51581
I
0.925
MTR_7g018500
Medicago truncatula
MTR_7g018500
I
0.925
BRC2
Arabidopsis thaliana
AT1G68800
I
0.922
GLYMA19G05921
Glycine max
GLYMA19G05921
I
0.918
BRC2
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_2000933
I
0.917
GLYMA08G28691
Glycine max
GLYMA08G28691
I
0.917
GLYMA13G07475
Glycine max
GLYMA13G07475
I
0.917
SapurV1A.0682s0140
Salix purpurea
SapurV1A.0682s0140
I
0.917
chr2.LjB17A04.40.nc
Lotus japonicus
chr2.LjB17A04.40.nc
I
0.917
30167.m000856
Ricinus communis
30167.m000856
I
0.915
POPTR_0017s13980
Populus trichocarpa
POPTR_0017s13980
I
0.914
cassava10552.m1
Manihot esculenta
cassava10552.m1
I
0.913
Cucsa.280880
Cucumis sativus
Cucsa.280880
I
0.912
TCP1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2001059
I
0.911
MDP0000272980
Malus domestica
MDP0000272980
I
0.911
gene03882-v1.0-hybrid
Fragaria vesca
gene03882-v1.0-hybrid
I
0.910
Cucsa.031600
Cucumis sativus
Cucsa.031600
I
0.909
Solyc05g009900.1
Solanum lycopersicum
Solyc05g009900.1
I
0.906
Bostr.26959s0002
Boechera stricta
Bostr.26959s0002
I
0.905
Cagra.1157s0001
Capsella grandiflora
Cagra.1157s0001
I
0.905
Carubv10020487m.g
Capsella rubella
Carubv10020487m.g
I
0.905
Cucsa.238090
Cucumis sativus
Cucsa.238090
I
0.901
MTR_6g017055
Medicago truncatula
MTR_6g017055
I
0.900
Aquca_002_01093
Aquilegia coerulea
Aquca_002_01093
I
0.900
Lus10021713.g
Linum usitatissimum
Lus10021713.g
I
0.899
MDP0000173048
Malus domestica
MDP0000173048
I
0.897
PGSC0003DMG400007467
Solanum tuberosum
PGSC0003DMG400007467
I
0.896
PGSC0003DMG400000823
Solanum tuberosum
PGSC0003DMG400000823
I
0.895
POPTR_0010s14030
Populus trichocarpa
POPTR_0010s14030
I
0.895
PRUPE_ppa016240mg
Prunus persica
PRUPE_ppa016240mg
I
0.895
Pm029002
Prunus mume
Pm029002
I
0.895
Solyc04g006980.1
Solanum lycopersicum
Solyc04g006980.1
I
0.894
cassava16230.m1
Manihot esculenta
cassava16230.m1
I
0.892
Bra004097
Brassica rapa
Bra004097
I
0.891
Cucsa.283930
Cucumis sativus
Cucsa.283930
I
0.891
Cla016709
Citrullus lanatus
Cla016709
I
0.887
Cla002355
Citrullus lanatus
Cla002355
I
0.885
evm.TU.supercontig_1401.1
Carica papaya
evm.TU.supercontig_1401.1
I
0.885
mgf019480m
Mimulus guttatus
mgf019480m
I
0.883
Lus10035055.g
Linum usitatissimum
Lus10035055.g
I
0.883
SapurV1A.0304s0080
Salix purpurea
SapurV1A.0304s0080
I
0.883
Cla007227
Citrullus lanatus
Cla007227
I
0.880
POPTR_0008s11470
Populus trichocarpa
POPTR_0008s11470
I
0.877
evm.TU.supercontig_179.29
Carica papaya
evm.TU.supercontig_179.29
I
0.877
TCM_011874
Theobroma cacao
TCM_011874
I
0.876
BRC2
Vitis vinifera
VIT_01s0011g02920
I
0.875
Bo6g103670
Brassica oleracea
Bo6g103670
I
0.874
Bostr.26959s0184
Boechera stricta
Bostr.26959s0184
I
0.874
29738.m001041
Ricinus communis
29738.m001041
I
0.872
Ciclev10024246m.g
Citrus clementina
Ciclev10024246m.g
I
0.871
Ciclev10033382m.g
Citrus clementina
Ciclev10033382m.g
I
0.871
orange1.1g035911m.g
Citrus sinensis
orange1.1g035911m.g
I
0.871
orange1.1g039323m.g
Citrus sinensis
orange1.1g039323m.g
I
0.871
Gorai.008G186800
Gossypium raimondii
Gorai.008G186800
I
0.870
Carubv10020555m.g
Capsella rubella
Carubv10020555m.g
I
0.866
LjSGA_018294.2
Lotus japonicus
LjSGA_018294.2
I
0.863
TCM_019518
Theobroma cacao
TCM_019518
I
0.862
TCP1
Vitis vinifera
VIT_14s0083g00150
I
0.861
Eucgr.J01466
Eucalyptus grandis
Eucgr.J01466
I
0.861
Eucgr.B00699
Eucalyptus grandis
Eucgr.B00699
I
0.860
Bo2g061250
Brassica oleracea
Bo2g061250
I
0.859
Bra038350
Brassica rapa
Bra038350
I
0.859
Cagra.1125s0016
Capsella grandiflora
Cagra.1125s0016
I
0.859
Bra004212
Brassica rapa
Bra004212
I
0.857
PK19717.1
Cannabis sativa
PK19717.1
D
0.857
mgf026636m
Mimulus guttatus
mgf026636m
I
0.853
mgf022233m
Mimulus guttatus
mgf022233m
I
0.850
PRUPE_ppa027156mg
Prunus persica
PRUPE_ppa027156mg
I
0.848
Pm015499
Prunus mume
Pm015499
I
0.848
Bo6g099040
Brassica oleracea
Bo6g099040
I
0.846
mgf024687m
Mimulus guttatus
mgf024687m
I
0.843
Gorai.001G200400
Gossypium raimondii
Gorai.001G200400
I
0.841
TCM_012252
Theobroma cacao
TCM_012252
I
0.840
Bo2g055640
Brassica oleracea
Bo2g055640
I
0.837
Bra034010
Brassica rapa
Bra034010
I
0.837
TCP1
Arabidopsis thaliana
AT1G67260
D
0.834
Thhalv10019499m.g
Eutrema salsugineum
Thhalv10019499m.g
I
0.834
GLYMA17G13065
Glycine max
GLYMA17G13065
I
0.833
Lus10034072.g
Linum usitatissimum
Lus10034072.g
I
0.830