CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ORUFI08G17540
(
Oryza rufipogon
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
ORUFI08G17540
T344215_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TB1
M01312_2.00
Oryza sativa
GGSCCCCCYM
KRGGGGGSCC
PBM
Lambert et al.(2019)
pTH8740
0.830
0.418
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ORUFI08G17540.1
TCP
116
254
PFRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDKLGFDKASRTVEWLLTQSKHAINRLTLPDSADAAAAPAFAAAPPPADQHSSAMAAAAASAAKEKGEASSSSTTNASSARARNRDHDGSSPVAPMDERGRRGVE
Links
Other
TCP
family TFs
Other
Oryza rufipogon
TFs
82 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGIOSGA028717
Oryza indica
BGIOSGA028717
I
0.983
OS08G0432300
Oryza sativa
OS08G0432300
I
0.983
OGLUM08G16380
Oryza glumaepatula
OGLUM08G16380
I
0.981
ORGLA08G0137200
Oryza glaberrima
ORGLA08G0137200
I
0.967
ONIVA08G16720
Oryza nivara
ONIVA08G16720
I
0.966
OMERI08G12900
Oryza meridionalis
OMERI08G12900
I
0.960
OBART08G15630
Oryza barthii
OBART08G15630
N
0.954
OPUNC08G13710
Oryza punctata
OPUNC08G13710
I
0.948
LPERR08G12880
Leersia perrieri
LPERR08G12880
I
0.928
BRADI3G36590
Brachypodium distachyon
BRADI3G36590
N
0.927
Si033183m.g
Setaria italica
Si033183m.g
I
0.927
Pavir.Bb02154
Panicum virgatum
Pavir.Bb02154
I
0.923
OMERI09G07770
Oryza meridionalis
OMERI09G07770
I
0.921
Pavir.Ba01820
Panicum virgatum
Pavir.Ba01820
I
0.920
BRADI4G29980
Brachypodium distachyon
BRADI4G29980
I
0.918
Sb02g024450
Sorghum bicolor
Sb02g024450
I
0.918
OPUNC09G08520
Oryza punctata
OPUNC09G08520
I
0.917
BGIOSGA030744
Oryza indica
BGIOSGA030744
I
0.916
OBART09G10040
Oryza barthii
OBART09G10040
I
0.916
OGLUM09G10300
Oryza glumaepatula
OGLUM09G10300
I
0.916
ONIVA09G09540
Oryza nivara
ONIVA09G09540
I
0.916
ORUFI09G10660
Oryza rufipogon
ORUFI09G10660
I
0.916
OS09G0410500
Oryza sativa
OS09G0410500
I
0.916
F775_01923
Aegilops tauschii
F775_01923
I
0.914
LPERR09G06870
Leersia perrieri
LPERR09G06870
I
0.914
Traes_5DL_46A3B0DAB1
Triticum aestivum
Traes_5DL_46A3B0DAB1
I
0.912
MLOC_4614
Hordeum vulgare
MLOC_4614
I
0.911
TRIUR3_20728
Triticum urartu
TRIUR3_20728
I
0.910
Si015230m.g
Setaria italica
Si015230m.g
I
0.909
GRMZM2G064628
Zea mays
GRMZM2G064628
I
0.908
MLOC_58142
Hordeum vulgare
MLOC_58142
I
0.907
GRMZM2G110242
Zea mays
GRMZM2G110242
I
0.906
Traes_5BL_19F383CC71
Triticum aestivum
Traes_5BL_19F383CC71
I
0.903
GRMZM2G060319
Zea mays
GRMZM2G060319
I
0.898
Sb07g021140
Sorghum bicolor
Sb07g021140
I
0.896
GRMZM2G055024
Zea mays
GRMZM2G055024
I
0.894
GRMZM2G166687
Zea mays
GRMZM2G166687
I
0.893
Pavir.Fb01590
Panicum virgatum
Pavir.Fb01590
I
0.892
Pavir.Fa00870
Panicum virgatum
Pavir.Fa00870
I
0.886
SapurV1A.1895s0010
Salix purpurea
SapurV1A.1895s0010
I
0.875
SapurV1A.1895s0020
Salix purpurea
SapurV1A.1895s0020
I
0.875
SapurV1A.0301s0010
Salix purpurea
SapurV1A.0301s0010
I
0.868
30174.m008721
Ricinus communis
30174.m008721
I
0.867
cassava9378.m1
Manihot esculenta
cassava9378.m1
I
0.864
GRMZM2G031905
Zea mays
GRMZM2G031905
I
0.863
POPTR_0015s03140
Populus trichocarpa
POPTR_0015s03140
I
0.859
SapurV1A.0583s0060
Salix purpurea
SapurV1A.0583s0060
I
0.859
GRMZM2G062711
Zea mays
GRMZM2G062711
I
0.856
POPTR_0012s05660
Populus trichocarpa
POPTR_0012s05660
I
0.855
cassava32886.m1
Manihot esculenta
cassava32886.m1
I
0.852
Lus10032465.g
Linum usitatissimum
Lus10032465.g
N
0.851
BRADI1G11060
Brachypodium distachyon
BRADI1G11060
I
0.840
Sb01g010690
Sorghum bicolor
Sb01g010690
I
0.840
Gorai.007G007500
Gossypium raimondii
Gorai.007G007500
I
0.838
OMERI03G27910
Oryza meridionalis
OMERI03G27910
I
0.837
TCM_012252
Theobroma cacao
TCM_012252
I
0.837
PRUPE_ppa027156mg
Prunus persica
PRUPE_ppa027156mg
I
0.833
Pm015499
Prunus mume
Pm015499
I
0.833
Gorai.008G285300
Gossypium raimondii
Gorai.008G285300
I
0.833
Cagra.1681s0023
Capsella grandiflora
Cagra.1681s0023
I
0.832
Carubv10013748m.g
Capsella rubella
Carubv10013748m.g
I
0.832
BGIOSGA013417
Oryza indica
BGIOSGA013417
I
0.830
OGLUM03G31540
Oryza glumaepatula
OGLUM03G31540
I
0.830
ONIVA03G32600
Oryza nivara
ONIVA03G32600
I
0.830
ORUFI03G32570
Oryza rufipogon
ORUFI03G32570
I
0.830
TB1
Oryza sativa
OS03G0706500
D
0.830
GLYMA06G23410
Glycine max
GLYMA06G23410
N
0.829
LPERR03G25950
Leersia perrieri
LPERR03G25950
I
0.829
OBART03G31290
Oryza barthii
OBART03G31290
I
0.828
ORGLA03G0289500
Oryza glaberrima
ORGLA03G0289500
I
0.828
GLYMA04G22407
Glycine max
GLYMA04G22407
I
0.826
Si038692m.g
Setaria italica
Si038692m.g
I
0.826
30167.m000856
Ricinus communis
30167.m000856
I
0.826
Pavir.Ib04362
Panicum virgatum
Pavir.Ib04362
I
0.826
PRUPE_ppa015026mg
Prunus persica
PRUPE_ppa015026mg
I
0.825
Pm030202
Prunus mume
Pm030202
I
0.825
Bra034010
Brassica rapa
Bra034010
I
0.824
Pavir.Ia00838
Panicum virgatum
Pavir.Ia00838
I
0.824
GSMUA_Achr2G21050_001
Musa acuminata
GSMUA_Achr2G21050_001
I
0.823
mgf024687m
Mimulus guttatus
mgf024687m
I
0.823
MDP0000224810
Malus domestica
MDP0000224810
N
0.823
MLOC_70116
Hordeum vulgare
MLOC_70116
I
0.822