POPTR_0008s11470 (Populus trichocarpa)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 POPTR_0008s11470 T344292_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS

SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.903 0.435
PK19717.1
M01318_2.00
Cannabis sativa
GGGSCCCMC

GKGGGSCCC
PBM
Lambert et al.(2019)
pTH10142
0.867 0.390
TCP1
M07276_2.00
Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH

DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY
Dap-seq
OMalley et al.(2016)
TCP1_col_a
0.857 0.370
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0008s11470.1 TCP 116 271

Links

Other TCP family TFs
Other Populus trichocarpa TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29844.m003312 Ricinus communis 29844.m003312 N
30169.m006534 Ricinus communis 30169.m006534 N
AMTR_s00008p00198780 Amborella trichopoda AMTR_s00008p00198780 N
AMTR_s00015p00239460 Amborella trichopoda AMTR_s00015p00239460 N
Aquca_037_00084 Aquilegia coerulea Aquca_037_00084 N
Aquca_135_00008 Aquilegia coerulea Aquca_135_00008 N
BGIOSGA006748 Oryza indica BGIOSGA006748 N
BGIOSGA023024 Oryza indica BGIOSGA023024 N
Bo2g046020 Brassica oleracea Bo2g046020 N
Bo3g022850 Brassica oleracea Bo3g022850 N
Bo3g060420 Brassica oleracea Bo3g060420 N
Bo6g114730 Brassica oleracea Bo6g114730 N
Bo9g110960 Brassica oleracea Bo9g110960 N
Bostr.2570s0048 Boechera stricta Bostr.2570s0048 N
Bostr.26833s0957 Boechera stricta Bostr.26833s0957 N
Bra001183 Brassica rapa Bra001183 N
Bra003073 Brassica rapa Bra003073 N
Bra022638 Brassica rapa Bra022638 N
Bra029088 Brassica rapa Bra029088 N
BRADI1G38650 Brachypodium distachyon BRADI1G38650 N
BRADI3G09670 Brachypodium distachyon BRADI3G09670 N
Cagra.0084s0068 Capsella grandiflora Cagra.0084s0068 N
Cagra.1772s0035 Capsella grandiflora Cagra.1772s0035 N
Carubv10012751m.g Capsella rubella Carubv10012751m.g N
Carubv10026630m.g Capsella rubella Carubv10026630m.g N
cassava11522.m1 Manihot esculenta cassava11522.m1 N
cassava32469.m1 Manihot esculenta cassava32469.m1 N
cassava3377.m1 Manihot esculenta cassava3377.m1 N
cassava7222.valid.m1 Manihot esculenta cassava7222.valid.m1 N
Ca_03951 Cicer arietinum Ca_03951 N
Ca_13080 Cicer arietinum Ca_13080 N
chr6.CM0139.250.nd Lotus japonicus chr6.CM0139.250.nd N
Ciclev10005947m.g Citrus clementina Ciclev10005947m.g N
Ciclev10007150m.g Citrus clementina Ciclev10007150m.g N
Cla004300 Citrullus lanatus Cla004300 N
Cla016479 Citrullus lanatus Cla016479 N
Cucsa.313010 Cucumis sativus Cucsa.313010 N
estExt_gwp_gw1.C_710125 Physcomitrella patens estExt_gwp_gw1.C_710125 N
Eucgr.A02667 Eucalyptus grandis Eucgr.A02667 N
Eucgr.H03591 Eucalyptus grandis Eucgr.H03591 N
evm.TU.supercontig_3.51 Carica papaya evm.TU.supercontig_3.51 N
gene06093-v1.0-hybrid Fragaria vesca gene06093-v1.0-hybrid N
GLYMA04G41710 Glycine max GLYMA04G41710 N
GLYMA06G13081 Glycine max GLYMA06G13081 N
GLYMA10G29760 Glycine max GLYMA10G29760 N
GLYMA13G27880 Glycine max GLYMA13G27880 N
GLYMA15G11130 Glycine max GLYMA15G11130 N
Gorai.006G054300 Gossypium raimondii Gorai.006G054300 N
Gorai.008G270700 Gossypium raimondii Gorai.008G270700 N
GRMZM2G045109 Zea mays GRMZM2G045109 N
GRMZM2G064638 Zea mays GRMZM2G064638 N
GRMZM2G085751 Zea mays GRMZM2G085751 N
GSMUA_Achr10G01060_001 Musa acuminata GSMUA_Achr10G01060_001 N
GSMUA_Achr5G06780_001 Musa acuminata GSMUA_Achr5G06780_001 N
GSMUA_Achr8G19870_001 Musa acuminata GSMUA_Achr8G19870_001 N
LPERR02G09400 Leersia perrieri LPERR02G09400 N
LPERR06G13950 Leersia perrieri LPERR06G13950 N
Lus10001066.g Linum usitatissimum Lus10001066.g N
Lus10007139.g Linum usitatissimum Lus10007139.g N
Lus10014938.g Linum usitatissimum Lus10014938.g N
Lus10039328.g Linum usitatissimum Lus10039328.g N
MDP0000131133 Malus domestica MDP0000131133 N
MDP0000205030 Malus domestica MDP0000205030 N
MDP0000318772 Malus domestica MDP0000318772 N
mgf011108m Mimulus guttatus mgf011108m N
mgf014552m Mimulus guttatus mgf014552m N
MLOC_54435 Hordeum vulgare MLOC_54435 N
MTR_1g028470 Medicago truncatula MTR_1g028470 N
MTR_2g022280 Medicago truncatula MTR_2g022280 N
MTR_3g090850 Medicago truncatula MTR_3g090850 N
MTR_5g064950 Medicago truncatula MTR_5g064950 N
MUTE Arabidopsis thaliana AT3G06120 N
MUTE Arabidopsis lyrata scaffold_300691.1 N
MUTE Vitis vinifera VIT_05s0020g02700 N
OB02G19900 Oryza brachyantha OB02G19900 N
OBART02G11110 Oryza barthii OBART02G11110 N
OBART06G16920 Oryza barthii OBART06G16920 N
OGLUM02G11060 Oryza glumaepatula OGLUM02G11060 N
OGLUM06G17990 Oryza glumaepatula OGLUM06G17990 N
OLONG_015104 Oryza longistaminata OLONG_015104 N
OMERI02G11850 Oryza meridionalis OMERI02G11850 N
OMERI06G17780 Oryza meridionalis OMERI06G17780 N
ONIVA02G12460 Oryza nivara ONIVA02G12460 N
ONIVA06G19730 Oryza nivara ONIVA06G19730 N
OPUNC02G09860 Oryza punctata OPUNC02G09860 N
OPUNC06G15310 Oryza punctata OPUNC06G15310 N
orange1.1g042904m.g Citrus sinensis orange1.1g042904m.g N
ORGLA02G0100500 Oryza glaberrima ORGLA02G0100500 N
ORGLA06G0140300 Oryza glaberrima ORGLA06G0140300 N
ORUFI02G11080 Oryza rufipogon ORUFI02G11080 N
ORUFI06G17910 Oryza rufipogon ORUFI06G17910 N
OS02G0257500 Oryza sativa OS02G0257500 N
OS06G0526100 Oryza sativa OS06G0526100 N
Pavir.Aa02723 Panicum virgatum Pavir.Aa02723 N
Pavir.Ab01030 Panicum virgatum Pavir.Ab01030 N
Pavir.Da00918 Panicum virgatum Pavir.Da00918 N
Pavir.Db01402 Panicum virgatum Pavir.Db01402 N
PDK_20s1314901g001 Phoenix dactylifera PDK_20s1314901g001 N
PGSC0003DMG400009101 Solanum tuberosum PGSC0003DMG400009101 N
PK01904.1 Cannabis sativa PK01904.1 N
Pm008014 Prunus mume Pm008014 N
Pm019784 Prunus mume Pm019784 N
POPTR_0008s20720 Populus trichocarpa POPTR_0008s20720 N
POPTR_0012s01370 Populus trichocarpa POPTR_0012s01370 N
POPTR_0015s06160 Populus trichocarpa POPTR_0015s06160 N
PRUPE_ppa015055mg Prunus persica PRUPE_ppa015055mg N
PRUPE_ppa019299mg Prunus persica PRUPE_ppa019299mg N
SapurV1A.0022s0230 Salix purpurea SapurV1A.0022s0230 N
SapurV1A.0377s0010 Salix purpurea SapurV1A.0377s0010 N
SapurV1A.1043s0040 Salix purpurea SapurV1A.1043s0040 N
SapurV1A.1227s0030 Salix purpurea SapurV1A.1227s0030 N
Sb04g009390 Sorghum bicolor Sb04g009390 N
Sb10g020490 Sorghum bicolor Sb10g020490 N
Si006640m.g Setaria italica Si006640m.g N
Si017482m.g Setaria italica Si017482m.g N
Solyc03g007410.2 Solanum lycopersicum Solyc03g007410.2 N
SPCH Arabidopsis lyrata Al_scaffold_0008_1712 N
SPCH Arabidopsis thaliana AT5G53210 N
SPCH Vitis vinifera VIT_16s0050g02500 N
TCM_015345 Theobroma cacao TCM_015345 N
TCM_020520 Theobroma cacao TCM_020520 N
Thhalv10002990m.g Eutrema salsugineum Thhalv10002990m.g N
Thhalv10013877m.g Eutrema salsugineum Thhalv10013877m.g N
Thhalv10022251m.g Eutrema salsugineum Thhalv10022251m.g N
Traes_7DL_1717A9083 Triticum aestivum Traes_7DL_1717A9083 N