CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
POPTR_0008s11470
(
Populus trichocarpa
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
POPTR_0008s11470
T344292_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS
SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.903
0.435
PK19717.1
M01318_2.00
Cannabis sativa
GGGSCCCMC
GKGGGSCCC
PBM
Lambert et al.(2019)
pTH10142
0.867
0.390
TCP1
M07276_2.00
Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY
Dap-seq
OMalley et al.(2016)
TCP1_col_a
0.857
0.370
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0008s11470.1
TCP
116
271
RTGKDRHSKIHTAQGPRDRRMRLSLQISRKFFDLQDMLGFDKASKTIEWLFTKSKAGIKELTDSVPGGRRRCSICADGKSVCSTPESEVVSGIKLTPETNGDKRGTKAKNDSLVSNPKEKRSKKVHKPVFNLVDRDSREKARARARERTRERMKNQ
Links
Other
TCP
family TFs
Other
Populus trichocarpa
TFs
111 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29844.m003312
Ricinus communis
29844.m003312
N
30169.m006534
Ricinus communis
30169.m006534
N
AMTR_s00008p00198780
Amborella trichopoda
AMTR_s00008p00198780
N
AMTR_s00015p00239460
Amborella trichopoda
AMTR_s00015p00239460
N
Aquca_037_00084
Aquilegia coerulea
Aquca_037_00084
N
Aquca_135_00008
Aquilegia coerulea
Aquca_135_00008
N
BGIOSGA006748
Oryza indica
BGIOSGA006748
N
BGIOSGA023024
Oryza indica
BGIOSGA023024
N
Bo2g046020
Brassica oleracea
Bo2g046020
N
Bo3g022850
Brassica oleracea
Bo3g022850
N
Bo3g060420
Brassica oleracea
Bo3g060420
N
Bo6g114730
Brassica oleracea
Bo6g114730
N
Bo9g110960
Brassica oleracea
Bo9g110960
N
Bostr.2570s0048
Boechera stricta
Bostr.2570s0048
N
Bostr.26833s0957
Boechera stricta
Bostr.26833s0957
N
Bra001183
Brassica rapa
Bra001183
N
Bra003073
Brassica rapa
Bra003073
N
Bra022638
Brassica rapa
Bra022638
N
Bra029088
Brassica rapa
Bra029088
N
BRADI1G38650
Brachypodium distachyon
BRADI1G38650
N
BRADI3G09670
Brachypodium distachyon
BRADI3G09670
N
Cagra.0084s0068
Capsella grandiflora
Cagra.0084s0068
N
Cagra.1772s0035
Capsella grandiflora
Cagra.1772s0035
N
Carubv10012751m.g
Capsella rubella
Carubv10012751m.g
N
Carubv10026630m.g
Capsella rubella
Carubv10026630m.g
N
cassava11522.m1
Manihot esculenta
cassava11522.m1
N
cassava32469.m1
Manihot esculenta
cassava32469.m1
N
cassava3377.m1
Manihot esculenta
cassava3377.m1
N
cassava7222.valid.m1
Manihot esculenta
cassava7222.valid.m1
N
Ca_03951
Cicer arietinum
Ca_03951
N
Ca_13080
Cicer arietinum
Ca_13080
N
chr6.CM0139.250.nd
Lotus japonicus
chr6.CM0139.250.nd
N
Ciclev10005947m.g
Citrus clementina
Ciclev10005947m.g
N
Ciclev10007150m.g
Citrus clementina
Ciclev10007150m.g
N
Cla004300
Citrullus lanatus
Cla004300
N
Cla016479
Citrullus lanatus
Cla016479
N
Cucsa.313010
Cucumis sativus
Cucsa.313010
N
estExt_gwp_gw1.C_710125
Physcomitrella patens
estExt_gwp_gw1.C_710125
N
Eucgr.A02667
Eucalyptus grandis
Eucgr.A02667
N
Eucgr.H03591
Eucalyptus grandis
Eucgr.H03591
N
evm.TU.supercontig_3.51
Carica papaya
evm.TU.supercontig_3.51
N
gene06093-v1.0-hybrid
Fragaria vesca
gene06093-v1.0-hybrid
N
GLYMA04G41710
Glycine max
GLYMA04G41710
N
GLYMA06G13081
Glycine max
GLYMA06G13081
N
GLYMA10G29760
Glycine max
GLYMA10G29760
N
GLYMA13G27880
Glycine max
GLYMA13G27880
N
GLYMA15G11130
Glycine max
GLYMA15G11130
N
Gorai.006G054300
Gossypium raimondii
Gorai.006G054300
N
Gorai.008G270700
Gossypium raimondii
Gorai.008G270700
N
GRMZM2G045109
Zea mays
GRMZM2G045109
N
GRMZM2G064638
Zea mays
GRMZM2G064638
N
GRMZM2G085751
Zea mays
GRMZM2G085751
N
GSMUA_Achr10G01060_001
Musa acuminata
GSMUA_Achr10G01060_001
N
GSMUA_Achr5G06780_001
Musa acuminata
GSMUA_Achr5G06780_001
N
GSMUA_Achr8G19870_001
Musa acuminata
GSMUA_Achr8G19870_001
N
LPERR02G09400
Leersia perrieri
LPERR02G09400
N
LPERR06G13950
Leersia perrieri
LPERR06G13950
N
Lus10001066.g
Linum usitatissimum
Lus10001066.g
N
Lus10007139.g
Linum usitatissimum
Lus10007139.g
N
Lus10014938.g
Linum usitatissimum
Lus10014938.g
N
Lus10039328.g
Linum usitatissimum
Lus10039328.g
N
MDP0000131133
Malus domestica
MDP0000131133
N
MDP0000205030
Malus domestica
MDP0000205030
N
MDP0000318772
Malus domestica
MDP0000318772
N
mgf011108m
Mimulus guttatus
mgf011108m
N
mgf014552m
Mimulus guttatus
mgf014552m
N
MLOC_54435
Hordeum vulgare
MLOC_54435
N
MTR_1g028470
Medicago truncatula
MTR_1g028470
N
MTR_2g022280
Medicago truncatula
MTR_2g022280
N
MTR_3g090850
Medicago truncatula
MTR_3g090850
N
MTR_5g064950
Medicago truncatula
MTR_5g064950
N
MUTE
Arabidopsis thaliana
AT3G06120
N
MUTE
Arabidopsis lyrata
scaffold_300691.1
N
MUTE
Vitis vinifera
VIT_05s0020g02700
N
OB02G19900
Oryza brachyantha
OB02G19900
N
OBART02G11110
Oryza barthii
OBART02G11110
N
OBART06G16920
Oryza barthii
OBART06G16920
N
OGLUM02G11060
Oryza glumaepatula
OGLUM02G11060
N
OGLUM06G17990
Oryza glumaepatula
OGLUM06G17990
N
OLONG_015104
Oryza longistaminata
OLONG_015104
N
OMERI02G11850
Oryza meridionalis
OMERI02G11850
N
OMERI06G17780
Oryza meridionalis
OMERI06G17780
N
ONIVA02G12460
Oryza nivara
ONIVA02G12460
N
ONIVA06G19730
Oryza nivara
ONIVA06G19730
N
OPUNC02G09860
Oryza punctata
OPUNC02G09860
N
OPUNC06G15310
Oryza punctata
OPUNC06G15310
N
orange1.1g042904m.g
Citrus sinensis
orange1.1g042904m.g
N
ORGLA02G0100500
Oryza glaberrima
ORGLA02G0100500
N
ORGLA06G0140300
Oryza glaberrima
ORGLA06G0140300
N
ORUFI02G11080
Oryza rufipogon
ORUFI02G11080
N
ORUFI06G17910
Oryza rufipogon
ORUFI06G17910
N
OS02G0257500
Oryza sativa
OS02G0257500
N
OS06G0526100
Oryza sativa
OS06G0526100
N
Pavir.Aa02723
Panicum virgatum
Pavir.Aa02723
N
Pavir.Ab01030
Panicum virgatum
Pavir.Ab01030
N
Pavir.Da00918
Panicum virgatum
Pavir.Da00918
N
Pavir.Db01402
Panicum virgatum
Pavir.Db01402
N
PDK_20s1314901g001
Phoenix dactylifera
PDK_20s1314901g001
N
PGSC0003DMG400009101
Solanum tuberosum
PGSC0003DMG400009101
N
PK01904.1
Cannabis sativa
PK01904.1
N
Pm008014
Prunus mume
Pm008014
N
Pm019784
Prunus mume
Pm019784
N
POPTR_0008s20720
Populus trichocarpa
POPTR_0008s20720
N
POPTR_0012s01370
Populus trichocarpa
POPTR_0012s01370
N
POPTR_0015s06160
Populus trichocarpa
POPTR_0015s06160
N
PRUPE_ppa015055mg
Prunus persica
PRUPE_ppa015055mg
N
PRUPE_ppa019299mg
Prunus persica
PRUPE_ppa019299mg
N
SapurV1A.0022s0230
Salix purpurea
SapurV1A.0022s0230
N
SapurV1A.0377s0010
Salix purpurea
SapurV1A.0377s0010
N
SapurV1A.1043s0040
Salix purpurea
SapurV1A.1043s0040
N
SapurV1A.1227s0030
Salix purpurea
SapurV1A.1227s0030
N
Sb04g009390
Sorghum bicolor
Sb04g009390
N
Sb10g020490
Sorghum bicolor
Sb10g020490
N
Si006640m.g
Setaria italica
Si006640m.g
N
Si017482m.g
Setaria italica
Si017482m.g
N
Solyc03g007410.2
Solanum lycopersicum
Solyc03g007410.2
N
SPCH
Arabidopsis lyrata
Al_scaffold_0008_1712
N
SPCH
Arabidopsis thaliana
AT5G53210
N
SPCH
Vitis vinifera
VIT_16s0050g02500
N
TCM_015345
Theobroma cacao
TCM_015345
N
TCM_020520
Theobroma cacao
TCM_020520
N
Thhalv10002990m.g
Eutrema salsugineum
Thhalv10002990m.g
N
Thhalv10013877m.g
Eutrema salsugineum
Thhalv10013877m.g
N
Thhalv10022251m.g
Eutrema salsugineum
Thhalv10022251m.g
N
Traes_7DL_1717A9083
Triticum aestivum
Traes_7DL_1717A9083
N