POPTR_0017s13980 (Populus trichocarpa)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 POPTR_0017s13980 T344309_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS

SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.938 0.481
TCP1
M07276_2.00
Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH

DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY
Dap-seq
OMalley et al.(2016)
TCP1_col_a
0.876 0.459
PK19717.1
M01318_2.00
Cannabis sativa
GGGSCCCMC

GKGGGSCCC
PBM
Lambert et al.(2019)
pTH10142
0.875 0.526
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0017s13980.1 TCP 33 165

Links

Other TCP family TFs
Other Populus trichocarpa TFs

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSXMAG00000001482 Xiphophorus maculatus ENSXMAG00000001482 I
ENSPFOG00000016287 Poecilia formosa ENSPFOG00000016287 I
arntl2 Oryzias latipes ENSORLG00000010946 I
ENSONIG00000014665 Oreochromis niloticus ENSONIG00000014665 I
arntl2 Tetraodon nigroviridis ENSTNIG00000012142 I
arntl2 Takifugu rubripes ENSTRUG00000007832 I
arntl2 Danio rerio ENSDARG00000041381 I
ENSAMXG00000020233 Astyanax mexicanus ENSAMXG00000020233 I
Ogr07520 Ophisaurus gracilis Ogr07520 N
Tal_R011603 Tyto alba Tal_R011603 N
ENSPSIG00000009416 Pelodiscus sinensis ENSPSIG00000009416 N
ARNTL2 Pan troglodytes ENSPTRG00000004788 N
Pvit_19389 Pogona vitticeps Pvit_19389 N
ARNTL2 Pteropus vampyrus ENSPVAG00000013771 N
ARNTL2 Sus scrofa ENSSSCG00000000551 N
ENSSTOG00000001344 Ictidomys tridecemlineatus ENSSTOG00000001344 N
ENSTGUG00000012163 Taeniopygia guttata ENSTGUG00000012163 N
Gfo_R015185 Geospiza fortis Gfo_R015185 N
Myotis_brandtii_ARNTL2_10027352 Myotis brandtii Myotis_brandtii_ARNTL2_10027352 N
ENSTSYG00000005541 Tarsius syrichta ENSTSYG00000005541 N
ARNTL2 Tursiops truncatus ENSTTRG00000012339 N
ENSPANG00000004474 Papio anubis ENSPANG00000004474 N
Aan_R007949 Calypte anna Aan_R007949 N
Afo_R006305 Aptenodytes forsteri Afo_R006305 N
Cmyd_10013756 Chelonia mydas Cmyd_10013756 N
ENSP00000266503-D1 Bos grunniens ENSP00000266503-D1 N
ENSP00000266503 Macaca fascicularis ENSP00000266503 N
ENSLOCG00000015224 Lepisosteus oculatus ENSLOCG00000015224 N
ENSAMEG00000011610 Ailuropoda melanoleuca ENSAMEG00000011610 N
ENSAPLG00000008758 Anas platyrhynchos ENSAPLG00000008758 N
ARNTL2 Bos taurus ENSBTAG00000011804 N
ARNTL2 Canis familiaris ENSCAFG00000011089 N
ENSCSAG00000007636 Chlorocebus sabaeus ENSCSAG00000007636 N
ENSFALG00000003942 Ficedula albicollis ENSFALG00000003942 N
ARNTL2 Felis catus ENSFCAG00000000386 N
ARNTL2 Homo sapiens ENSG00000029153 N
ARNTL2 Gallus gallus ENSGALG00000014096 N
ENSLACG00000009646 Latimeria chalumnae ENSLACG00000009646 N
ENSPPYG00000004380 Pongo abelii ENSPPYG00000004380 N
ENSMEUG00000007045 Macropus eugenii ENSMEUG00000007045 N
ARNTL2 Meleagris gallopavo ENSMGAG00000013735 N
ARNTL2 Myotis lucifugus ENSMLUG00000003256 N
ARNTL2 Macaca mulatta ENSMMUG00000023249 N
ENSMPUG00000010512 Mustela putorius furo ENSMPUG00000010512 N
ENSNLEG00000005463 Nomascus leucogenys ENSNLEG00000005463 N
ENSOARG00000019779 Ovis aries ENSOARG00000019779 N
ARNTL2 Otolemur garnettii ENSOGAG00000011668 N
ARNTL2 Anolis carolinensis ENSACAG00000012446 N
ARNTL2 Procavia capensis ENSPCAG00000008486 N