CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0017s13980
(
Populus trichocarpa
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
POPTR_0017s13980
T344309_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS
SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.938
0.481
TCP1
M07276_2.00
Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY
Dap-seq
OMalley et al.(2016)
TCP1_col_a
0.876
0.459
PK19717.1
M01318_2.00
Cannabis sativa
GGGSCCCMC
GKGGGSCCC
PBM
Lambert et al.(2019)
pTH10142
0.875
0.526
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0017s13980.1
TCP
33
165
SVKKDRHSKIYTAQGLRDRRVRLSIEIARKFFDLQEMLGFDKASKTLDWLLTKSKYAIEELAKNGGEKCLSSTSTNCEVVSESGDLEDRVPSESQKQKMKKMQNMAVDLLVKESRAKARERARERTRVKMCTR
Links
Other
TCP
family TFs
Other
Populus trichocarpa
TFs
122 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSXMAG00000001482
Xiphophorus maculatus
ENSXMAG00000001482
I
ENSPFOG00000016287
Poecilia formosa
ENSPFOG00000016287
I
arntl2
Oryzias latipes
ENSORLG00000010946
I
ENSONIG00000014665
Oreochromis niloticus
ENSONIG00000014665
I
arntl2
Tetraodon nigroviridis
ENSTNIG00000012142
I
arntl2
Takifugu rubripes
ENSTRUG00000007832
I
arntl2
Danio rerio
ENSDARG00000041381
I
ENSAMXG00000020233
Astyanax mexicanus
ENSAMXG00000020233
I
Ogr07520
Ophisaurus gracilis
Ogr07520
N
Tal_R011603
Tyto alba
Tal_R011603
N
ENSPSIG00000009416
Pelodiscus sinensis
ENSPSIG00000009416
N
ARNTL2
Pan troglodytes
ENSPTRG00000004788
N
Pvit_19389
Pogona vitticeps
Pvit_19389
N
ARNTL2
Pteropus vampyrus
ENSPVAG00000013771
N
ARNTL2
Sus scrofa
ENSSSCG00000000551
N
ENSSTOG00000001344
Ictidomys tridecemlineatus
ENSSTOG00000001344
N
ENSTGUG00000012163
Taeniopygia guttata
ENSTGUG00000012163
N
Gfo_R015185
Geospiza fortis
Gfo_R015185
N
Myotis_brandtii_ARNTL2_10027352
Myotis brandtii
Myotis_brandtii_ARNTL2_10027352
N
ENSTSYG00000005541
Tarsius syrichta
ENSTSYG00000005541
N
ARNTL2
Tursiops truncatus
ENSTTRG00000012339
N
ENSPANG00000004474
Papio anubis
ENSPANG00000004474
N
Aan_R007949
Calypte anna
Aan_R007949
N
Afo_R006305
Aptenodytes forsteri
Afo_R006305
N
Cmyd_10013756
Chelonia mydas
Cmyd_10013756
N
ENSP00000266503-D1
Bos grunniens
ENSP00000266503-D1
N
ENSP00000266503
Macaca fascicularis
ENSP00000266503
N
ENSLOCG00000015224
Lepisosteus oculatus
ENSLOCG00000015224
N
ENSAMEG00000011610
Ailuropoda melanoleuca
ENSAMEG00000011610
N
ENSAPLG00000008758
Anas platyrhynchos
ENSAPLG00000008758
N
ARNTL2
Bos taurus
ENSBTAG00000011804
N
ARNTL2
Canis familiaris
ENSCAFG00000011089
N
ENSCSAG00000007636
Chlorocebus sabaeus
ENSCSAG00000007636
N
ENSFALG00000003942
Ficedula albicollis
ENSFALG00000003942
N
ARNTL2
Felis catus
ENSFCAG00000000386
N
ARNTL2
Homo sapiens
ENSG00000029153
N
ARNTL2
Gallus gallus
ENSGALG00000014096
N
ENSLACG00000009646
Latimeria chalumnae
ENSLACG00000009646
N
ENSPPYG00000004380
Pongo abelii
ENSPPYG00000004380
N
ENSMEUG00000007045
Macropus eugenii
ENSMEUG00000007045
N
ARNTL2
Meleagris gallopavo
ENSMGAG00000013735
N
ARNTL2
Myotis lucifugus
ENSMLUG00000003256
N
ARNTL2
Macaca mulatta
ENSMMUG00000023249
N
ENSMPUG00000010512
Mustela putorius furo
ENSMPUG00000010512
N
ENSNLEG00000005463
Nomascus leucogenys
ENSNLEG00000005463
N
ENSOARG00000019779
Ovis aries
ENSOARG00000019779
N
ARNTL2
Otolemur garnettii
ENSOGAG00000011668
N
ARNTL2
Anolis carolinensis
ENSACAG00000012446
N
ARNTL2
Procavia capensis
ENSPCAG00000008486
N