CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BRC1
(
Arabidopsis lyrata
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
scaffold_302193.1
T344363_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold_302193.1
TCP
137
299
LGRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIAKTLSYQCSFSSGDESHTRPELRSMDTSSDLCELPSMWTVDDRGSNTNTTETRGNKVDGRSMRGKRKRPEPRTPILKKLSKDERAKARERAKDRTMEKMMMK
Links
Other
TCP
family TFs
Other
Arabidopsis lyrata
TFs
50 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BRC1
Arabidopsis thaliana
AT3G18550
I
0.976
Bra001710
Brassica rapa
Bra001710
I
0.971
Cagra.1681s0023
Capsella grandiflora
Cagra.1681s0023
I
0.971
Carubv10013748m.g
Capsella rubella
Carubv10013748m.g
I
0.971
Bostr.19424s0807
Boechera stricta
Bostr.19424s0807
I
0.970
Thhalv10021948m.g
Eutrema salsugineum
Thhalv10021948m.g
N
0.968
Bo5g117410
Brassica oleracea
Bo5g117410
N
0.962
Bo3g071560
Brassica oleracea
Bo3g071560
I
0.960
Bo1g117490
Brassica oleracea
Bo1g117490
I
0.957
Bra037579
Brassica rapa
Bra037579
I
0.957
evm.TU.supercontig_13.48
Carica papaya
evm.TU.supercontig_13.48
N
0.880
Cucsa.113660
Cucumis sativus
Cucsa.113660
N
0.873
GLYMA04G22407
Glycine max
GLYMA04G22407
I
0.870
TCM_012252
Theobroma cacao
TCM_012252
I
0.865
GLYMA06G23410
Glycine max
GLYMA06G23410
N
0.858
GLYMA17G13065
Glycine max
GLYMA17G13065
I
0.857
MTR_4g111935
Medicago truncatula
MTR_4g111935
I
0.854
Cucsa.198860
Cucumis sativus
Cucsa.198860
N
0.852
Gorai.007G007500
Gossypium raimondii
Gorai.007G007500
I
0.852
Cla019282
Citrullus lanatus
Cla019282
N
0.850
chr4.LjB15O07.110.nc
Lotus japonicus
chr4.LjB15O07.110.nc
I
0.845
30174.m008721
Ricinus communis
30174.m008721
I
0.842
GRMZM2G064628
Zea mays
GRMZM2G064628
I
0.841
cassava9378.m1
Manihot esculenta
cassava9378.m1
I
0.841
F775_01923
Aegilops tauschii
F775_01923
I
0.839
Ciclev10024246m.g
Citrus clementina
Ciclev10024246m.g
I
0.838
Gorai.008G285300
Gossypium raimondii
Gorai.008G285300
I
0.838
orange1.1g035911m.g
Citrus sinensis
orange1.1g035911m.g
I
0.838
GLYMA05G07943
Glycine max
GLYMA05G07943
I
0.837
MDP0000224810
Malus domestica
MDP0000224810
N
0.837
cassava32886.m1
Manihot esculenta
cassava32886.m1
I
0.836
Cla018797
Citrullus lanatus
Cla018797
N
0.834
Sb02g024450
Sorghum bicolor
Sb02g024450
I
0.832
Pavir.Ib04362
Panicum virgatum
Pavir.Ib04362
I
0.829
LjSGA_018294.2
Lotus japonicus
LjSGA_018294.2
I
0.827
GRMZM2G055024
Zea mays
GRMZM2G055024
I
0.826
LPERR09G06870
Leersia perrieri
LPERR09G06870
I
0.826
Si015230m.g
Setaria italica
Si015230m.g
I
0.826
Sb01g010690
Sorghum bicolor
Sb01g010690
I
0.825
Pavir.Ia00838
Panicum virgatum
Pavir.Ia00838
I
0.825
Pavir.Fb01590
Panicum virgatum
Pavir.Fb01590
I
0.824
LPERR03G25950
Leersia perrieri
LPERR03G25950
I
0.823
BGIOSGA030744
Oryza indica
BGIOSGA030744
I
0.822
OBART09G10040
Oryza barthii
OBART09G10040
I
0.822
OGLUM09G10300
Oryza glumaepatula
OGLUM09G10300
I
0.822
ONIVA09G09540
Oryza nivara
ONIVA09G09540
I
0.822
ORUFI09G10660
Oryza rufipogon
ORUFI09G10660
I
0.822
OS09G0410500
Oryza sativa
OS09G0410500
I
0.822
Si038692m.g
Setaria italica
Si038692m.g
I
0.822
Eucgr.B00699
Eucalyptus grandis
Eucgr.B00699
I
0.822