CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc03g045030.1
(
Solanum lycopersicum
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
Solyc03g045030.1
T344406_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS
SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.823
0.382
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc03g045030.1.1
TCP
71
183
KKSKKRERSCGKILTAQGPRDRRIRLSINMARKFFDLQELLGFDKPSKTIDWLFTHSELALEELTNWSTHQTHRPKISGSLSKSNQQQGFRKKSQKSKRSNTKRVKEKGKSTS
Links
Other
TCP
family TFs
Other
Solanum lycopersicum
TFs
27 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PGSC0003DMG400003362
Solanum tuberosum
PGSC0003DMG400003362
I
0.952
evm.TU.supercontig_1401.1
Carica papaya
evm.TU.supercontig_1401.1
I
0.870
mgf019480m
Mimulus guttatus
mgf019480m
I
0.862
mgf022233m
Mimulus guttatus
mgf022233m
I
0.862
cassava16230.m1
Manihot esculenta
cassava16230.m1
I
0.859
29738.m001041
Ricinus communis
29738.m001041
I
0.858
gene03882-v1.0-hybrid
Fragaria vesca
gene03882-v1.0-hybrid
I
0.858
SapurV1A.0304s0080
Salix purpurea
SapurV1A.0304s0080
I
0.853
POPTR_0017s13980
Populus trichocarpa
POPTR_0017s13980
I
0.844
POPTR_0010s14030
Populus trichocarpa
POPTR_0010s14030
I
0.841
BRC2
Vitis vinifera
VIT_01s0011g02920
I
0.841
Gorai.008G186800
Gossypium raimondii
Gorai.008G186800
I
0.836
Lus10034072.g
Linum usitatissimum
Lus10034072.g
I
0.836
BRC2
Arabidopsis thaliana
AT1G68800
I
0.834
PRUPE_ppa016240mg
Prunus persica
PRUPE_ppa016240mg
I
0.832
Pm029002
Prunus mume
Pm029002
I
0.832
MDP0000272980
Malus domestica
MDP0000272980
I
0.832
POPTR_0008s11470
Populus trichocarpa
POPTR_0008s11470
I
0.831
BRC2
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_2000933
I
0.829
Cucsa.238090
Cucumis sativus
Cucsa.238090
I
0.827
GSMUA_Achr10G25520_001
Musa acuminata
GSMUA_Achr10G25520_001
I
0.826
Cla016709
Citrullus lanatus
Cla016709
I
0.826
Ciclev10033382m.g
Citrus clementina
Ciclev10033382m.g
I
0.826
orange1.1g039323m.g
Citrus sinensis
orange1.1g039323m.g
I
0.826
MDP0000173048
Malus domestica
MDP0000173048
I
0.824
Lus10003078.g
Linum usitatissimum
Lus10003078.g
I
0.823
PK12240.1
Cannabis sativa
PK12240.1
D
0.823