CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc03g119770.2
(
Solanum lycopersicum
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03634 (TCP)
IPR005333
Solyc03g119770.2
T344409_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS
SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.845
0.437
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc03g119770.2.1
TCP
110
255
PSKKDRHSKINTAHGPRDRRMRLSLEIARKFFNLQDLLGFDKASKTVEWLLTKSKSAVNDLVQKINKDKCSGSENPNIATVSSPSAESCEVIDESAATNTAETQKQQKKKVKSIRRAIIHPVVAKESRKEARARARERTIIKKSLN
Links
Other
TCP
family TFs
Other
Solanum lycopersicum
TFs
117 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_01923
Aegilops tauschii
F775_01923
I
0.839
Aquca_002_01093
Aquilegia coerulea
Aquca_002_01093
I
0.882
Aquca_026_00208
Aquilegia coerulea
Aquca_026_00208
I
0.859
TCP1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2001059
I
0.827
BRC2
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_2000933
I
0.868
BRC2
Arabidopsis thaliana
AT1G68800
I
0.868
Bostr.26959s0002
Boechera stricta
Bostr.26959s0002
I
0.851
BRADI3G36590
Brachypodium distachyon
BRADI3G36590
N
0.828
Bo2g061250
Brassica oleracea
Bo2g061250
I
0.856
Bra004097
Brassica rapa
Bra004097
I
0.831
Bra004212
Brassica rapa
Bra004212
I
0.829
Bra038350
Brassica rapa
Bra038350
I
0.856
PK12240.1
Cannabis sativa
PK12240.1
D
0.845
Cagra.1157s0001
Capsella grandiflora
Cagra.1157s0001
I
0.851
Carubv10020487m.g
Capsella rubella
Carubv10020487m.g
I
0.851
evm.TU.supercontig_1401.1
Carica papaya
evm.TU.supercontig_1401.1
I
0.870
evm.TU.supercontig_179.29
Carica papaya
evm.TU.supercontig_179.29
I
0.865
Cla002355
Citrullus lanatus
Cla002355
I
0.889
Cla007227
Citrullus lanatus
Cla007227
I
0.823
Cla016709
Citrullus lanatus
Cla016709
I
0.872
Cla019282
Citrullus lanatus
Cla019282
N
0.876
Ciclev10024246m.g
Citrus clementina
Ciclev10024246m.g
I
0.872
Ciclev10033382m.g
Citrus clementina
Ciclev10033382m.g
I
0.878
orange1.1g035911m.g
Citrus sinensis
orange1.1g035911m.g
I
0.872
orange1.1g039323m.g
Citrus sinensis
orange1.1g039323m.g
I
0.878
Cucsa.031600
Cucumis sativus
Cucsa.031600
I
0.859
Cucsa.198860
Cucumis sativus
Cucsa.198860
N
0.853
Cucsa.238090
Cucumis sativus
Cucsa.238090
I
0.855
Cucsa.280880
Cucumis sativus
Cucsa.280880
I
0.879
Cucsa.283930
Cucumis sativus
Cucsa.283930
I
0.860
Eucgr.B00699
Eucalyptus grandis
Eucgr.B00699
I
0.885
Eucgr.J01466
Eucalyptus grandis
Eucgr.J01466
I
0.831
Eucgr.K02654
Eucalyptus grandis
Eucgr.K02654
I
0.843
gene03882-v1.0-hybrid
Fragaria vesca
gene03882-v1.0-hybrid
I
0.881
GLYMA04G22407
Glycine max
GLYMA04G22407
I
0.846
GLYMA06G23410
Glycine max
GLYMA06G23410
N
0.835
GLYMA10G39141
Glycine max
GLYMA10G39141
I
0.823
GLYMA13G07475
Glycine max
GLYMA13G07475
I
0.838
GLYMA17G13065
Glycine max
GLYMA17G13065
I
0.828
GLYMA18G51581
Glycine max
GLYMA18G51581
I
0.834
GLYMA19G05921
Glycine max
GLYMA19G05921
I
0.837
Gorai.001G200400
Gossypium raimondii
Gorai.001G200400
I
0.851
Gorai.007G007500
Gossypium raimondii
Gorai.007G007500
I
0.867
Gorai.008G186800
Gossypium raimondii
Gorai.008G186800
I
0.882
Gorai.008G285300
Gossypium raimondii
Gorai.008G285300
I
0.838
LPERR08G12880
Leersia perrieri
LPERR08G12880
I
0.840
LPERR09G06870
Leersia perrieri
LPERR09G06870
I
0.827
Lus10021713.g
Linum usitatissimum
Lus10021713.g
I
0.852
Lus10035055.g
Linum usitatissimum
Lus10035055.g
I
0.837
chr1.LjB10L14.10.nc
Lotus japonicus
chr1.LjB10L14.10.nc
I
0.845
chr2.LjB17A04.40.nc
Lotus japonicus
chr2.LjB17A04.40.nc
I
0.858
chr4.LjB15O07.110.nc
Lotus japonicus
chr4.LjB15O07.110.nc
I
0.826
chr5.CM0357.550.nc
Lotus japonicus
chr5.CM0357.550.nc
I
0.824
MDP0000173048
Malus domestica
MDP0000173048
I
0.881
MDP0000219838
Malus domestica
MDP0000219838
N
0.850
MDP0000224810
Malus domestica
MDP0000224810
N
0.880
MDP0000272980
Malus domestica
MDP0000272980
I
0.864
cassava10552.m1
Manihot esculenta
cassava10552.m1
I
0.850
cassava16230.m1
Manihot esculenta
cassava16230.m1
I
0.858
cassava32886.m1
Manihot esculenta
cassava32886.m1
I
0.861
cassava9378.m1
Manihot esculenta
cassava9378.m1
I
0.837
MTR_6g017055
Medicago truncatula
MTR_6g017055
I
0.835
MTR_7g018500
Medicago truncatula
MTR_7g018500
I
0.862
mgf019480m
Mimulus guttatus
mgf019480m
I
0.854
mgf022233m
Mimulus guttatus
mgf022233m
I
0.847
mgf024687m
Mimulus guttatus
mgf024687m
I
0.859
OBART09G10040
Oryza barthii
OBART09G10040
I
0.844
OGLUM09G10300
Oryza glumaepatula
OGLUM09G10300
I
0.844
BGIOSGA030744
Oryza indica
BGIOSGA030744
I
0.844
OMERI09G07770
Oryza meridionalis
OMERI09G07770
I
0.822
ONIVA09G09540
Oryza nivara
ONIVA09G09540
I
0.844
OPUNC08G13710
Oryza punctata
OPUNC08G13710
I
0.826
OPUNC09G08520
Oryza punctata
OPUNC09G08520
I
0.829
ORUFI09G10660
Oryza rufipogon
ORUFI09G10660
I
0.844
OS09G0410500
Oryza sativa
OS09G0410500
I
0.844
Pavir.Ba01820
Panicum virgatum
Pavir.Ba01820
I
0.827
Pavir.Bb02154
Panicum virgatum
Pavir.Bb02154
I
0.835
PDK_20s1689851g001
Phoenix dactylifera
PDK_20s1689851g001
I
0.830
POPTR_0008s11470
Populus trichocarpa
POPTR_0008s11470
I
0.864
POPTR_0010s14030
Populus trichocarpa
POPTR_0010s14030
I
0.873
POPTR_0012s05660
Populus trichocarpa
POPTR_0012s05660
I
0.867
POPTR_0015s03140
Populus trichocarpa
POPTR_0015s03140
I
0.868
POPTR_0017s13980
Populus trichocarpa
POPTR_0017s13980
I
0.849
Pm015499
Prunus mume
Pm015499
I
0.849
Pm029002
Prunus mume
Pm029002
I
0.866
Pm030202
Prunus mume
Pm030202
I
0.864
PRUPE_ppa015026mg
Prunus persica
PRUPE_ppa015026mg
I
0.864
PRUPE_ppa016240mg
Prunus persica
PRUPE_ppa016240mg
I
0.866
PRUPE_ppa027156mg
Prunus persica
PRUPE_ppa027156mg
I
0.855
29738.m001041
Ricinus communis
29738.m001041
I
0.858
30167.m000856
Ricinus communis
30167.m000856
I
0.876
30174.m008721
Ricinus communis
30174.m008721
I
0.843
SapurV1A.0301s0010
Salix purpurea
SapurV1A.0301s0010
I
0.848
SapurV1A.0304s0080
Salix purpurea
SapurV1A.0304s0080
I
0.870
SapurV1A.0583s0060
Salix purpurea
SapurV1A.0583s0060
I
0.874
SapurV1A.0682s0140
Salix purpurea
SapurV1A.0682s0140
I
0.850
SapurV1A.1895s0010
Salix purpurea
SapurV1A.1895s0010
I
0.847
SapurV1A.1895s0020
Salix purpurea
SapurV1A.1895s0020
I
0.847
Si015230m.g
Setaria italica
Si015230m.g
I
0.832
Si033183m.g
Setaria italica
Si033183m.g
I
0.828
Solyc04g006980.1
Solanum lycopersicum
Solyc04g006980.1
I
0.873
Solyc05g009900.1
Solanum lycopersicum
Solyc05g009900.1
I
0.840
Solyc06g069240.1
Solanum lycopersicum
Solyc06g069240.1
N
0.912
PGSC0003DMG400000823
Solanum tuberosum
PGSC0003DMG400000823
I
0.840
PGSC0003DMG400004054
Solanum tuberosum
PGSC0003DMG400004054
N
0.912
PGSC0003DMG400005705
Solanum tuberosum
PGSC0003DMG400005705
I
0.970
PGSC0003DMG400007467
Solanum tuberosum
PGSC0003DMG400007467
I
0.857
Sb02g024450
Sorghum bicolor
Sb02g024450
I
0.831
Sb07g021140
Sorghum bicolor
Sb07g021140
I
0.831
TCM_011874
Theobroma cacao
TCM_011874
I
0.886
TCM_012252
Theobroma cacao
TCM_012252
I
0.859
TCM_019518
Theobroma cacao
TCM_019518
I
0.850
BRC2
Vitis vinifera
VIT_01s0011g02920
I
0.872
TCP1
Vitis vinifera
VIT_14s0083g00150
I
0.844
GRMZM2G060319
Zea mays
GRMZM2G060319
I
0.846
GRMZM2G064628
Zea mays
GRMZM2G064628
I
0.840
GRMZM2G166687
Zea mays
GRMZM2G166687
I
0.834