Solyc05g009900.1 (Solanum lycopersicum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Solyc05g009900.1 T344413_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.910 0.411
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.860 0.390
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.844 0.333
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc05g009900.1.1 TCP 135 275

Links

Other TCP family TFs
Other Solanum lycopersicum TFs

92 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.964
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.946
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.945
TCM_011874 Theobroma cacao TCM_011874 I 0.924
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.923
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.920
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.919
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.918
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.917
BRC2 Arabidopsis thaliana AT1G68800 I 0.916
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.913
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.912
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.912
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.911
MDP0000173048 Malus domestica MDP0000173048 I 0.911
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.911
PK12240.1 Cannabis sativa PK12240.1 D 0.910
TCM_019518 Theobroma cacao TCM_019518 I 0.909
29738.m001041 Ricinus communis 29738.m001041 I 0.909
Cla002355 Citrullus lanatus Cla002355 I 0.908
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.907
Pm029002 Prunus mume Pm029002 I 0.907
MDP0000272980 Malus domestica MDP0000272980 I 0.907
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.906
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.906
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.906
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.906
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.906
Bo2g061250 Brassica oleracea Bo2g061250 I 0.905
Bra038350 Brassica rapa Bra038350 I 0.905
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.905
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.903
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.901
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.900
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.900
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.900
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.899
mgf026636m Mimulus guttatus mgf026636m I 0.898
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.898
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.897
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.897
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.897
Cla007227 Citrullus lanatus Cla007227 I 0.896
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.895
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.892
30167.m000856 Ricinus communis 30167.m000856 I 0.890
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.889
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.886
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.886
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.881
Cla016709 Citrullus lanatus Cla016709 I 0.878
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.878
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.876
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.876
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.871
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.867
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.867
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.865
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.863
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.861
PK19717.1 Cannabis sativa PK19717.1 D 0.860
Bra004097 Brassica rapa Bra004097 I 0.859
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.858
mgf019480m Mimulus guttatus mgf019480m I 0.858
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.857
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.852
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.852
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.852
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.850
Bo6g103670 Brassica oleracea Bo6g103670 I 0.849
Bra004212 Brassica rapa Bra004212 I 0.849
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.846
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.846
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.845
TCP1 Arabidopsis thaliana AT1G67260 D 0.844
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.844
Bra034010 Brassica rapa Bra034010 I 0.843
Bo6g099040 Brassica oleracea Bo6g099040 I 0.841
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.840
mgf024687m Mimulus guttatus mgf024687m I 0.840
Pm015499 Prunus mume Pm015499 I 0.838
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.838
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.838
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.834
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.833
Bo2g055640 Brassica oleracea Bo2g055640 I 0.831
MDP0000224810 Malus domestica MDP0000224810 N 0.828
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.827
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.827
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.824
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.824
mgf022233m Mimulus guttatus mgf022233m I 0.823