TCM_019518 (Theobroma cacao)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 TCM_019518 T344445_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.905 0.464
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.887 0.470
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.880 0.430
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY04262 TCP 112 262

Links

Other TCP family TFs
Other Theobroma cacao TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.954
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.918
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.910
mgf019480m Mimulus guttatus mgf019480m I 0.910
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.909
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.909
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.908
Bra004212 Brassica rapa Bra004212 I 0.907
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.906
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.906
TCP1 Arabidopsis thaliana AT1G67260 D 0.905
Cla016709 Citrullus lanatus Cla016709 I 0.905
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.903
Bo6g099040 Brassica oleracea Bo6g099040 I 0.902
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.902
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.902
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.902
Bo6g103670 Brassica oleracea Bo6g103670 I 0.900
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.900
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.899
30167.m000856 Ricinus communis 30167.m000856 I 0.899
Bra034010 Brassica rapa Bra034010 I 0.898
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.898
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.898
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.898
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.898
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.897
Bra004097 Brassica rapa Bra004097 I 0.896
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.895
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.894
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.894
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.893
Pm015499 Prunus mume Pm015499 I 0.893
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.891
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.891
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.890
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.890
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.890
BRC2 Arabidopsis thaliana AT1G68800 I 0.889
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.889
Cla007227 Citrullus lanatus Cla007227 I 0.889
Bo2g055640 Brassica oleracea Bo2g055640 I 0.888
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.888
PK19717.1 Cannabis sativa PK19717.1 D 0.887
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.885
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.884
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.883
Cla002355 Citrullus lanatus Cla002355 I 0.883
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.883
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.883
29738.m001041 Ricinus communis 29738.m001041 I 0.882
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.881
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.880
PK12240.1 Cannabis sativa PK12240.1 D 0.880
Bo2g061250 Brassica oleracea Bo2g061250 I 0.877
Bra038350 Brassica rapa Bra038350 I 0.877
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.877
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.876
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.875
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.874
Pm029002 Prunus mume Pm029002 I 0.874
30174.m008721 Ricinus communis 30174.m008721 I 0.874
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.874
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.874
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.872
MDP0000173048 Malus domestica MDP0000173048 I 0.871
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.868
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.868
MDP0000272980 Malus domestica MDP0000272980 I 0.868
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.867
TCM_011874 Theobroma cacao TCM_011874 I 0.866
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.866
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.866
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.865
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.865
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.864
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.863
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.862
mgf022233m Mimulus guttatus mgf022233m I 0.862
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.862
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.860
F775_01923 Aegilops tauschii F775_01923 I 0.855
GRMZM2G060319 Zea mays GRMZM2G060319 I 0.852
GRMZM2G166687 Zea mays GRMZM2G166687 I 0.852
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.850
Sb07g021140 Sorghum bicolor Sb07g021140 I 0.850
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.850
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.850
Pavir.Fa00870 Panicum virgatum Pavir.Fa00870 I 0.847
GRMZM2G055024 Zea mays GRMZM2G055024 I 0.845
Si015230m.g Setaria italica Si015230m.g I 0.845
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.845
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.845
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.843
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.843
evm.TU.supercontig_13.48 Carica papaya evm.TU.supercontig_13.48 N 0.842
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.841
Pavir.Fb01590 Panicum virgatum Pavir.Fb01590 I 0.838
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.836
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.836
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.836
GLYMA06G23410 Glycine max GLYMA06G23410 N 0.833
OMERI08G12900 Oryza meridionalis OMERI08G12900 I 0.833
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.831
LPERR08G12880 Leersia perrieri LPERR08G12880 I 0.831
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I 0.831
OPUNC08G13710 Oryza punctata OPUNC08G13710 I 0.830
mgf026636m Mimulus guttatus mgf026636m I 0.830
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.829
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.829
TRIUR3_20728 Triticum urartu TRIUR3_20728 I 0.829
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.829
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.829
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.826
MLOC_58142 Hordeum vulgare MLOC_58142 I 0.826
BRADI4G29980 Brachypodium distachyon BRADI4G29980 I 0.825
Cla019282 Citrullus lanatus Cla019282 N 0.825
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I 0.825
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.824
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I 0.824
GRMZM2G064628 Zea mays GRMZM2G064628 I 0.822