Cla007227 (Citrullus lanatus)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Cla007227 T344531_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.905 0.464
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.900 0.477
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.896 0.444
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla007227 TCP 102 252

Links

Other TCP family TFs
Other Citrullus lanatus TFs

87 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.943
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.916
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.915
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.910
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.909
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.908
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.907
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.906
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.906
TCP1 Arabidopsis thaliana AT1G67260 D 0.905
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.905
Cla016709 Citrullus lanatus Cla016709 I 0.905
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.904
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.904
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.904
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.903
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.902
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.902
PK19717.1 Cannabis sativa PK19717.1 D 0.900
TCM_011874 Theobroma cacao TCM_011874 I 0.899
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.899
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.899
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.898
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.897
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.897
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.897
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.896
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.896
30167.m000856 Ricinus communis 30167.m000856 I 0.896
PK12240.1 Cannabis sativa PK12240.1 D 0.896
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.895
MDP0000173048 Malus domestica MDP0000173048 I 0.895
MDP0000272980 Malus domestica MDP0000272980 I 0.895
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.893
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.893
Pm029002 Prunus mume Pm029002 I 0.893
29738.m001041 Ricinus communis 29738.m001041 I 0.893
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.892
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.890
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.890
Bra004212 Brassica rapa Bra004212 I 0.889
TCM_019518 Theobroma cacao TCM_019518 I 0.889
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.888
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.887
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.885
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.885
BRC2 Arabidopsis thaliana AT1G68800 I 0.884
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.884
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.884
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.881
Bo6g099040 Brassica oleracea Bo6g099040 I 0.880
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.880
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.880
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.879
Bo6g103670 Brassica oleracea Bo6g103670 I 0.875
Bra004097 Brassica rapa Bra004097 I 0.874
mgf019480m Mimulus guttatus mgf019480m I 0.874
Cla002355 Citrullus lanatus Cla002355 I 0.873
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.872
Bo2g055640 Brassica oleracea Bo2g055640 I 0.871
Bo2g061250 Brassica oleracea Bo2g061250 I 0.869
Bra038350 Brassica rapa Bra038350 I 0.869
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.868
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.868
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.868
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.864
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.862
Bra034010 Brassica rapa Bra034010 I 0.857
mgf026636m Mimulus guttatus mgf026636m I 0.856
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.855
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.854
Pm015499 Prunus mume Pm015499 I 0.854
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.850
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.849
mgf022233m Mimulus guttatus mgf022233m I 0.848
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.848
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.848
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.839
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.839
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.838
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.838
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.833
30174.m008721 Ricinus communis 30174.m008721 I 0.831
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.830
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.830
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.826
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.823