CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
30174.m008721
(
Ricinus communis
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03634 (TCP)
IPR005333
30174.m008721
T344590_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TB1
M01312_2.00
Oryza sativa
GGSCCCCCYM
KRGGGGGSCC
PBM
Lambert et al.(2019)
pTH8740
0.834
0.458
PK19717.1
M01318_2.00
Cannabis sativa
GGGSCCCMC
GKGGGSCCC
PBM
Lambert et al.(2019)
pTH10142
0.830
0.413
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS
SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.829
0.368
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
30174.m008721
TCP
39
193
SSKRDRHSKIDTAQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLIQSRPAIRKLFSTGLPSYSCSVGVAKSASSTSECEDVSGIDEAAVANIEGSKNSKGKKPSLSCVNKKKRPKASRKTAFHPLAKESREKARARARQRTEEKKRTR
Links
Other
TCP
family TFs
Other
Ricinus communis
TFs
158 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
cassava9378.m1
Manihot esculenta
cassava9378.m1
I
0.948
cassava32886.m1
Manihot esculenta
cassava32886.m1
I
0.946
POPTR_0012s05660
Populus trichocarpa
POPTR_0012s05660
I
0.938
POPTR_0015s03140
Populus trichocarpa
POPTR_0015s03140
I
0.936
SapurV1A.0583s0060
Salix purpurea
SapurV1A.0583s0060
I
0.936
SapurV1A.0301s0010
Salix purpurea
SapurV1A.0301s0010
I
0.923
SapurV1A.1895s0010
Salix purpurea
SapurV1A.1895s0010
I
0.922
SapurV1A.1895s0020
Salix purpurea
SapurV1A.1895s0020
I
0.922
Eucgr.B00699
Eucalyptus grandis
Eucgr.B00699
I
0.917
Gorai.007G007500
Gossypium raimondii
Gorai.007G007500
I
0.906
Ciclev10024246m.g
Citrus clementina
Ciclev10024246m.g
I
0.896
orange1.1g035911m.g
Citrus sinensis
orange1.1g035911m.g
I
0.896
Lus10032465.g
Linum usitatissimum
Lus10032465.g
N
0.889
POPTR_0010s14030
Populus trichocarpa
POPTR_0010s14030
I
0.888
PRUPE_ppa015026mg
Prunus persica
PRUPE_ppa015026mg
I
0.888
Pm030202
Prunus mume
Pm030202
I
0.888
MDP0000224810
Malus domestica
MDP0000224810
N
0.886
TCM_012252
Theobroma cacao
TCM_012252
I
0.885
Cla019282
Citrullus lanatus
Cla019282
N
0.885
Gorai.008G285300
Gossypium raimondii
Gorai.008G285300
I
0.884
SapurV1A.0304s0080
Salix purpurea
SapurV1A.0304s0080
I
0.881
Sb07g021140
Sorghum bicolor
Sb07g021140
I
0.880
Aquca_002_01093
Aquilegia coerulea
Aquca_002_01093
I
0.880
Ciclev10033382m.g
Citrus clementina
Ciclev10033382m.g
I
0.879
Gorai.001G200400
Gossypium raimondii
Gorai.001G200400
I
0.879
orange1.1g039323m.g
Citrus sinensis
orange1.1g039323m.g
I
0.879
GLYMA17G13065
Glycine max
GLYMA17G13065
I
0.878
PRUPE_ppa027156mg
Prunus persica
PRUPE_ppa027156mg
I
0.878
Cucsa.198860
Cucumis sativus
Cucsa.198860
N
0.878
GRMZM2G055024
Zea mays
GRMZM2G055024
I
0.877
Pm015499
Prunus mume
Pm015499
I
0.877
GLYMA05G07943
Glycine max
GLYMA05G07943
I
0.876
OMERI08G12900
Oryza meridionalis
OMERI08G12900
I
0.874
OPUNC08G13710
Oryza punctata
OPUNC08G13710
I
0.874
Sb02g024450
Sorghum bicolor
Sb02g024450
I
0.874
Si015230m.g
Setaria italica
Si015230m.g
I
0.874
TCM_019518
Theobroma cacao
TCM_019518
I
0.874
Cucsa.031600
Cucumis sativus
Cucsa.031600
I
0.873
Pavir.Fb01590
Panicum virgatum
Pavir.Fb01590
I
0.873
Thhalv10019499m.g
Eutrema salsugineum
Thhalv10019499m.g
I
0.873
F775_01923
Aegilops tauschii
F775_01923
I
0.872
OPUNC09G08520
Oryza punctata
OPUNC09G08520
I
0.872
evm.TU.supercontig_13.48
Carica papaya
evm.TU.supercontig_13.48
N
0.872
chr4.LjB15O07.110.nc
Lotus japonicus
chr4.LjB15O07.110.nc
I
0.872
OGLUM08G16380
Oryza glumaepatula
OGLUM08G16380
I
0.871
BRC1
Arabidopsis thaliana
AT3G18550
I
0.870
Cagra.1681s0023
Capsella grandiflora
Cagra.1681s0023
I
0.870
Carubv10013748m.g
Capsella rubella
Carubv10013748m.g
I
0.870
GRMZM2G060319
Zea mays
GRMZM2G060319
I
0.869
Aquca_026_00208
Aquilegia coerulea
Aquca_026_00208
I
0.869
LPERR08G12880
Leersia perrieri
LPERR08G12880
I
0.868
ONIVA08G16720
Oryza nivara
ONIVA08G16720
I
0.868
Cla002355
Citrullus lanatus
Cla002355
I
0.868
Bostr.19424s0807
Boechera stricta
Bostr.19424s0807
I
0.868
BGIOSGA028717
Oryza indica
BGIOSGA028717
I
0.867
ORUFI08G17540
Oryza rufipogon
ORUFI08G17540
I
0.867
OS08G0432300
Oryza sativa
OS08G0432300
I
0.867
Traes_5DL_46A3B0DAB1
Triticum aestivum
Traes_5DL_46A3B0DAB1
I
0.867
mgf022233m
Mimulus guttatus
mgf022233m
I
0.867
evm.TU.supercontig_1401.1
Carica papaya
evm.TU.supercontig_1401.1
I
0.867
GRMZM2G064628
Zea mays
GRMZM2G064628
I
0.866
GRMZM2G166687
Zea mays
GRMZM2G166687
I
0.866
29738.m001041
Ricinus communis
29738.m001041
I
0.865
Eucgr.K02654
Eucalyptus grandis
Eucgr.K02654
I
0.865
mgf024687m
Mimulus guttatus
mgf024687m
I
0.864
MDP0000173048
Malus domestica
MDP0000173048
I
0.864
BRADI4G29980
Brachypodium distachyon
BRADI4G29980
I
0.863
ORGLA08G0137200
Oryza glaberrima
ORGLA08G0137200
I
0.863
OMERI09G07770
Oryza meridionalis
OMERI09G07770
I
0.862
Pavir.Fa00870
Panicum virgatum
Pavir.Fa00870
I
0.862
TRIUR3_20728
Triticum urartu
TRIUR3_20728
I
0.861
cassava16230.m1
Manihot esculenta
cassava16230.m1
I
0.860
BGIOSGA030744
Oryza indica
BGIOSGA030744
I
0.859
MLOC_58142
Hordeum vulgare
MLOC_58142
I
0.859
OBART09G10040
Oryza barthii
OBART09G10040
I
0.859
OGLUM09G10300
Oryza glumaepatula
OGLUM09G10300
I
0.859
ONIVA09G09540
Oryza nivara
ONIVA09G09540
I
0.859
ORUFI09G10660
Oryza rufipogon
ORUFI09G10660
I
0.859
OS09G0410500
Oryza sativa
OS09G0410500
I
0.859
Traes_5BL_19F383CC71
Triticum aestivum
Traes_5BL_19F383CC71
I
0.859
MDP0000219838
Malus domestica
MDP0000219838
N
0.859
GRMZM2G110242
Zea mays
GRMZM2G110242
I
0.857
MLOC_4614
Hordeum vulgare
MLOC_4614
I
0.857
PGSC0003DMG400004054
Solanum tuberosum
PGSC0003DMG400004054
N
0.857
POPTR_0008s11470
Populus trichocarpa
POPTR_0008s11470
I
0.857
Cla016709
Citrullus lanatus
Cla016709
I
0.857
Solyc06g069240.1
Solanum lycopersicum
Solyc06g069240.1
N
0.856
BRC2
Vitis vinifera
VIT_01s0011g02920
I
0.855
Cucsa.280880
Cucumis sativus
Cucsa.280880
I
0.855
Pavir.Bb02154
Panicum virgatum
Pavir.Bb02154
I
0.854
MDP0000272980
Malus domestica
MDP0000272980
I
0.853
OBART08G15630
Oryza barthii
OBART08G15630
N
0.850
Si033183m.g
Setaria italica
Si033183m.g
I
0.849
TCM_011874
Theobroma cacao
TCM_011874
I
0.849
Pavir.Ba01820
Panicum virgatum
Pavir.Ba01820
I
0.849
LPERR09G06870
Leersia perrieri
LPERR09G06870
I
0.848
mgf026636m
Mimulus guttatus
mgf026636m
I
0.848
Cla018797
Citrullus lanatus
Cla018797
N
0.847
Bostr.26959s0002
Boechera stricta
Bostr.26959s0002
I
0.847
Cagra.1157s0001
Capsella grandiflora
Cagra.1157s0001
I
0.847
Carubv10020487m.g
Capsella rubella
Carubv10020487m.g
I
0.847
BRC2
Arabidopsis thaliana
AT1G68800
I
0.846
BRC2
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_2000933
I
0.846
PRUPE_ppa016240mg
Prunus persica
PRUPE_ppa016240mg
I
0.846
Pm029002
Prunus mume
Pm029002
I
0.846
gene03882-v1.0-hybrid
Fragaria vesca
gene03882-v1.0-hybrid
I
0.846
Gorai.008G186800
Gossypium raimondii
Gorai.008G186800
I
0.846
Lus10035055.g
Linum usitatissimum
Lus10035055.g
I
0.845
PGSC0003DMG400005705
Solanum tuberosum
PGSC0003DMG400005705
I
0.844
Thhalv10021948m.g
Eutrema salsugineum
Thhalv10021948m.g
N
0.844
Bra037579
Brassica rapa
Bra037579
I
0.843
Solyc03g119770.2
Solanum lycopersicum
Solyc03g119770.2
I
0.843
Bo2g055640
Brassica oleracea
Bo2g055640
I
0.842
Bo5g117410
Brassica oleracea
Bo5g117410
N
0.842
MTR_4g111935
Medicago truncatula
MTR_4g111935
I
0.842
BRC1
Arabidopsis lyrata
scaffold_302193.1
N
0.842
Bostr.26959s0184
Boechera stricta
Bostr.26959s0184
I
0.842
30167.m000856
Ricinus communis
30167.m000856
I
0.841
Bra001710
Brassica rapa
Bra001710
I
0.840
cassava10552.m1
Manihot esculenta
cassava10552.m1
I
0.840
GSMUA_Achr2G21050_001
Musa acuminata
GSMUA_Achr2G21050_001
I
0.839
Bo1g117490
Brassica oleracea
Bo1g117490
I
0.838
Bo3g071560
Brassica oleracea
Bo3g071560
I
0.838
Cucsa.113660
Cucumis sativus
Cucsa.113660
N
0.838
SapurV1A.0682s0140
Salix purpurea
SapurV1A.0682s0140
I
0.837
Cucsa.238090
Cucumis sativus
Cucsa.238090
I
0.836
PGSC0003DMG400007467
Solanum tuberosum
PGSC0003DMG400007467
I
0.835
Solyc04g006980.1
Solanum lycopersicum
Solyc04g006980.1
I
0.835
BGIOSGA013417
Oryza indica
BGIOSGA013417
I
0.834
GLYMA04G22407
Glycine max
GLYMA04G22407
I
0.834
OGLUM03G31540
Oryza glumaepatula
OGLUM03G31540
I
0.834
ONIVA03G32600
Oryza nivara
ONIVA03G32600
I
0.834
ORUFI03G32570
Oryza rufipogon
ORUFI03G32570
I
0.834
TB1
Oryza sativa
OS03G0706500
D
0.834
Bo2g061250
Brassica oleracea
Bo2g061250
I
0.833
Bra038350
Brassica rapa
Bra038350
I
0.833
Bo6g103670
Brassica oleracea
Bo6g103670
I
0.832
Bra034010
Brassica rapa
Bra034010
I
0.832
BRADI1G11060
Brachypodium distachyon
BRADI1G11060
I
0.831
BRADI3G36590
Brachypodium distachyon
BRADI3G36590
N
0.831
Cla007227
Citrullus lanatus
Cla007227
I
0.831
Cagra.1125s0016
Capsella grandiflora
Cagra.1125s0016
I
0.831
Carubv10020555m.g
Capsella rubella
Carubv10020555m.g
I
0.831
TCP1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2001059
I
0.830
LPERR03G25950
Leersia perrieri
LPERR03G25950
I
0.830
PK19717.1
Cannabis sativa
PK19717.1
D
0.830
Eucgr.J01466
Eucalyptus grandis
Eucgr.J01466
I
0.829
PK12240.1
Cannabis sativa
PK12240.1
D
0.829
Cucsa.283930
Cucumis sativus
Cucsa.283930
I
0.828
Bo6g099040
Brassica oleracea
Bo6g099040
I
0.827
PGSC0003DMG400000823
Solanum tuberosum
PGSC0003DMG400000823
I
0.827
GLYMA06G23410
Glycine max
GLYMA06G23410
N
0.826
OBART03G31290
Oryza barthii
OBART03G31290
I
0.826
OMERI03G27910
Oryza meridionalis
OMERI03G27910
I
0.826
ORGLA03G0289500
Oryza glaberrima
ORGLA03G0289500
I
0.826
Lus10021713.g
Linum usitatissimum
Lus10021713.g
I
0.826
GSMUA_Achr2G22480_001
Musa acuminata
GSMUA_Achr2G22480_001
I
0.822
chr1.LjB10L14.10.nc
Lotus japonicus
chr1.LjB10L14.10.nc
I
0.822