CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava20535.m1
(
Manihot esculenta
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03634 (TCP)
IPR005333
cassava20535.m1
T344601_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TCP19
M02504_2.00
Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN
PBM
Weirauch et al.(2014)
pTH7452
0.881
0.532
PCF2
M11399_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF2_01
0.876
0.443
LjSGA_053525.1
M02518_2.00
Lotus japonicus
GGNCCCAC
GTGGGNCC
PBM
Weirauch et al.(2014)
pTH9201
0.875
0.506
PK14653.1
M01317_2.00
Cannabis sativa
BGGSCCCAC
GTGGGSCCV
PBM
Lambert et al.(2019)
pTH11324
0.873
0.506
PK14653.1
M02517_2.00
Cannabis sativa
BTGGGCCCAV
BTGGGCCCAV
PBM
Weirauch et al.(2014)
pTH9586
0.873
0.506
VIT_15s0048g01150
M02515_2.00
Vitis vinifera
NNGGNCCCAC
GTGGGNCCNN
PBM
Weirauch et al.(2014)
pTH9294
0.867
0.532
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00
Arabidopsis lyrata
GRSCCCAC
GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9232
0.866
0.582
TCP9
M01086_2.00
Arabidopsis thaliana
NNGGGCCCACN
NGTGGGCCCNN
PBM
Sullivan et al.(2014)
pTH9796
0.860
0.532
TCP9
M07281_2.00
Arabidopsis thaliana
RTGGGDCCCAC
GTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a
0.860
0.532
TCP9
M07282_2.00
Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN
NVNHNHNHHGTGGGYCCCACH
Dap-seq
OMalley et al.(2016)
At2g45680_col_b
0.860
0.532
TCP20
M02502_2.00
Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC
PBM
Weirauch et al.(2014)
pTH8159
0.854
0.392
AT-TCP20
M02507_2.00
Arabidopsis lyrata
GRSCCCAC
GTGGGSYC
PBM
Weirauch et al.(2014)
pTH9229
0.854
0.392
TCP20
M07285_2.00
Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN
Dap-seq
OMalley et al.(2016)
TCP20_col_a
0.854
0.392
TCP20
M07286_2.00
Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
TCP20_colamp_a
0.854
0.392
TCP20
M11397_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP20_01
0.854
0.392
cassava45561.m1
M02516_2.00
Manihot esculenta
KGGVCCCACH
DGTGGGBCCM
PBM
Weirauch et al.(2014)
pTH9207
0.849
0.430
GLYMA19G26560
M02511_2.00
Glycine max
BGGBCCCAC
GTGGGVCCV
PBM
Weirauch et al.(2014)
pTH9184
0.846
0.443
PK13314.1
M01316_2.00
Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN
PBM
Lambert et al.(2019)
pTH11330
0.838
0.418
PK12736.1
M01315_2.00
Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN
PBM
Lambert et al.(2019)
pTH10121
0.836
0.443
TCP15
M00892_2.00
Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP15
0.836
0.430
TCP15
M07277_2.00
Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_col_a
0.836
0.430
TCP15
M07278_2.00
Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a
0.836
0.430
TCP15
M11394_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP15_01
0.836
0.430
TCP14
M07289_2.00
Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT
Dap-seq
OMalley et al.(2016)
TCP14_col_b
0.836
0.418
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava20535.m1
TCP
60
147
LRDPPRTAILRIFQLTRELEHKSNSETIRWFLEYAEPTIIEATSMGTIPVISVSINETLKMPTTSLARPDSNDLLPRKRWKRASINDF
Links
Other
TCP
family TFs
Other
Manihot esculenta
TFs
419 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Alligator_sinensis_CCG014285.1
Alligator sinensis
Alligator_sinensis_CCG014285.1
N
ENSAPLG00000014035
Anas platyrhynchos
ENSAPLG00000014035
N
Afo_R009911
Aptenodytes forsteri
Afo_R009911
N
BGLB002717
Biomphalaria glabrata
BGLB002717
N
Brh_R012356
Buceros rhinoceros
Brh_R012356
N
Aan_R003320
Calypte anna
Aan_R003320
N
ENSFALG00000012779
Ficedula albicollis
ENSFALG00000012779
N
ENSGALG00000000983
Gallus gallus
ENSGALG00000000983
N
Gfo_R014039
Geospiza fortis
Gfo_R014039
N
ENSLACG00000003590
Latimeria chalumnae
ENSLACG00000003590
N
L3MBTL1
Loxodonta africana
ENSLAFG00000012575
N
L3MBTL1
Meleagris gallopavo
ENSMGAG00000000827
N
Pvit_07756
Pogona vitticeps
Pvit_07756
N
ENSTGUG00000003474
Taeniopygia guttata
ENSTGUG00000003474
N
ENSTBEG00000014200
Tupaia belangeri
ENSTBEG00000014200
N
Tal_R013237
Tyto alba
Tal_R013237
N