cassava32886.m1 (Manihot esculenta)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 cassava32886.m1 T344611_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.847 0.382
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.827 0.357
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava32886.m1 TCP 123 279

Links

Other TCP family TFs
Other Manihot esculenta TFs

158 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.963
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.960
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.959
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.959
30174.m008721 Ricinus communis 30174.m008721 I 0.946
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.943
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.941
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.941
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.930
Cla019282 Citrullus lanatus Cla019282 N 0.925
MDP0000224810 Malus domestica MDP0000224810 N 0.919
Cucsa.198860 Cucumis sativus Cucsa.198860 N 0.912
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.906
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.906
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.900
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.900
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.900
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.900
MDP0000219838 Malus domestica MDP0000219838 N 0.896
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.895
TCM_012252 Theobroma cacao TCM_012252 I 0.892
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.891
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.891
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.889
evm.TU.supercontig_13.48 Carica papaya evm.TU.supercontig_13.48 N 0.887
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.886
Pm030202 Prunus mume Pm030202 I 0.886
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.886
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.886
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.882
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.882
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.881
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.881
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.879
TCM_011874 Theobroma cacao TCM_011874 I 0.876
BGIOSGA030744 Oryza indica BGIOSGA030744 I 0.875
LPERR08G12880 Leersia perrieri LPERR08G12880 I 0.875
OBART09G10040 Oryza barthii OBART09G10040 I 0.875
OGLUM09G10300 Oryza glumaepatula OGLUM09G10300 I 0.875
ONIVA09G09540 Oryza nivara ONIVA09G09540 I 0.875
ORUFI09G10660 Oryza rufipogon ORUFI09G10660 I 0.875
OS09G0410500 Oryza sativa OS09G0410500 I 0.875
29738.m001041 Ricinus communis 29738.m001041 I 0.875
F775_01923 Aegilops tauschii F775_01923 I 0.874
GRMZM2G055024 Zea mays GRMZM2G055024 I 0.874
MDP0000173048 Malus domestica MDP0000173048 I 0.874
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.873
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.873
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.872
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.872
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.871
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.871
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.870
Pm015499 Prunus mume Pm015499 I 0.870
mgf024687m Mimulus guttatus mgf024687m I 0.870
GRMZM2G060319 Zea mays GRMZM2G060319 I 0.869
Pavir.Fb01590 Panicum virgatum Pavir.Fb01590 I 0.869
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.868
TCM_019518 Theobroma cacao TCM_019518 I 0.868
GRMZM2G166687 Zea mays GRMZM2G166687 I 0.867
ONIVA08G16720 Oryza nivara ONIVA08G16720 I 0.867
TRIUR3_20728 Triticum urartu TRIUR3_20728 I 0.867
Pavir.Fa00870 Panicum virgatum Pavir.Fa00870 I 0.867
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.866
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I 0.866
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.866
OPUNC08G13710 Oryza punctata OPUNC08G13710 I 0.865
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.865
Si015230m.g Setaria italica Si015230m.g I 0.865
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.865
Cagra.1681s0023 Capsella grandiflora Cagra.1681s0023 I 0.865
Carubv10013748m.g Capsella rubella Carubv10013748m.g I 0.865
Sb07g021140 Sorghum bicolor Sb07g021140 I 0.864
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.863
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.863
Pm029002 Prunus mume Pm029002 I 0.863
BRADI4G29980 Brachypodium distachyon BRADI4G29980 I 0.862
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.862
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.861
MTR_4g111935 Medicago truncatula MTR_4g111935 I 0.860
MDP0000272980 Malus domestica MDP0000272980 I 0.860
Bo5g117410 Brassica oleracea Bo5g117410 N 0.858
OMERI08G12900 Oryza meridionalis OMERI08G12900 I 0.858
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.858
Cla002355 Citrullus lanatus Cla002355 I 0.858
Lus10032465.g Linum usitatissimum Lus10032465.g N 0.858
Bra001710 Brassica rapa Bra001710 I 0.857
ORGLA08G0137200 Oryza glaberrima ORGLA08G0137200 I 0.856
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.856
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I 0.856
mgf026636m Mimulus guttatus mgf026636m I 0.855
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.855
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.855
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.855
BRC2 Arabidopsis thaliana AT1G68800 I 0.854
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.854
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.854
OMERI09G07770 Oryza meridionalis OMERI09G07770 I 0.853
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.853
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.853
BGIOSGA028717 Oryza indica BGIOSGA028717 I 0.852
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.852
OGLUM08G16380 Oryza glumaepatula OGLUM08G16380 I 0.852
ORUFI08G17540 Oryza rufipogon ORUFI08G17540 I 0.852
OS08G0432300 Oryza sativa OS08G0432300 I 0.852
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.852
Bostr.19424s0807 Boechera stricta Bostr.19424s0807 I 0.851
BRC1 Arabidopsis thaliana AT3G18550 I 0.850
Bo3g071560 Brassica oleracea Bo3g071560 I 0.850
Si033183m.g Setaria italica Si033183m.g I 0.850
Cla016709 Citrullus lanatus Cla016709 I 0.850
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.850
GRMZM2G064628 Zea mays GRMZM2G064628 I 0.849
MLOC_58142 Hordeum vulgare MLOC_58142 I 0.849
Thhalv10021948m.g Eutrema salsugineum Thhalv10021948m.g N 0.849
Bo1g117490 Brassica oleracea Bo1g117490 I 0.848
Bra037579 Brassica rapa Bra037579 I 0.848
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.848
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.848
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.848
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I 0.848
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.847
30167.m000856 Ricinus communis 30167.m000856 I 0.847
PK19717.1 Cannabis sativa PK19717.1 D 0.847
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.846
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.846
GSMUA_Achr2G21050_001 Musa acuminata GSMUA_Achr2G21050_001 I 0.845
OBART08G15630 Oryza barthii OBART08G15630 N 0.843
Bra034010 Brassica rapa Bra034010 I 0.842
Bo2g061250 Brassica oleracea Bo2g061250 I 0.841
Bra038350 Brassica rapa Bra038350 I 0.841
Cucsa.113660 Cucumis sativus Cucsa.113660 N 0.841
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.841
Bo6g103670 Brassica oleracea Bo6g103670 I 0.840
BRADI3G36590 Brachypodium distachyon BRADI3G36590 N 0.840
Bo6g099040 Brassica oleracea Bo6g099040 I 0.838
Bo2g055640 Brassica oleracea Bo2g055640 I 0.837
Bra004212 Brassica rapa Bra004212 I 0.836
BRC1 Arabidopsis lyrata scaffold_302193.1 N 0.836
mgf022233m Mimulus guttatus mgf022233m I 0.836
Cla018797 Citrullus lanatus Cla018797 N 0.835
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.834
Cla007227 Citrullus lanatus Cla007227 I 0.833
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.832
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.832
PK16683.1 Cannabis sativa PK16683.1 N 0.831
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.829
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.828
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.828
TCP1 Arabidopsis thaliana AT1G67260 D 0.827
GLYMA06G23410 Glycine max GLYMA06G23410 N 0.826
LPERR03G25950 Leersia perrieri LPERR03G25950 I 0.826
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.826
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.825
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.825
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.823
Bra004097 Brassica rapa Bra004097 I 0.822
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.822