CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.113660
(
Cucumis sativus
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03634 (TCP)
IPR005333
Cucsa.113660
T344636_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.113660.1
TCP
84
236
LSKKDRHSKITTAKGVRDRRMRLSLPVAKQFFGLQDMLGVDKGSKTVEWLLIQAKPEILKLATEKKNHNCFTISNSSSNYSNSSELDNEVGVIIGDQNLNTKDNNIKISKKKIKKKKIMRAKQLPIRKTMAKELREKARERARARTLEKLKSQ
Links
Other
TCP
family TFs
Other
Cucumis sativus
TFs
67 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cla018797
Citrullus lanatus
Cla018797
N
0.926
GLYMA17G13065
Glycine max
GLYMA17G13065
I
0.917
TCM_012252
Theobroma cacao
TCM_012252
I
0.910
GLYMA04G22407
Glycine max
GLYMA04G22407
I
0.903
Gorai.008G285300
Gossypium raimondii
Gorai.008G285300
I
0.902
Ciclev10024246m.g
Citrus clementina
Ciclev10024246m.g
I
0.897
orange1.1g035911m.g
Citrus sinensis
orange1.1g035911m.g
I
0.897
BRC1
Arabidopsis thaliana
AT3G18550
I
0.883
LjSGA_018294.2
Lotus japonicus
LjSGA_018294.2
I
0.882
evm.TU.supercontig_13.48
Carica papaya
evm.TU.supercontig_13.48
N
0.881
MTR_4g111935
Medicago truncatula
MTR_4g111935
I
0.879
Thhalv10021948m.g
Eutrema salsugineum
Thhalv10021948m.g
N
0.879
Cucsa.198860
Cucumis sativus
Cucsa.198860
N
0.878
Bo1g117490
Brassica oleracea
Bo1g117490
I
0.877
Bra037579
Brassica rapa
Bra037579
I
0.877
Bostr.19424s0807
Boechera stricta
Bostr.19424s0807
I
0.875
Eucgr.B00699
Eucalyptus grandis
Eucgr.B00699
I
0.875
Bra001710
Brassica rapa
Bra001710
I
0.874
BRC1
Arabidopsis lyrata
scaffold_302193.1
N
0.873
MDP0000224810
Malus domestica
MDP0000224810
N
0.871
GLYMA05G07943
Glycine max
GLYMA05G07943
I
0.869
MDP0000219838
Malus domestica
MDP0000219838
N
0.869
chr4.LjB15O07.110.nc
Lotus japonicus
chr4.LjB15O07.110.nc
I
0.869
Bo3g071560
Brassica oleracea
Bo3g071560
I
0.868
Cla019282
Citrullus lanatus
Cla019282
N
0.868
PRUPE_ppa015026mg
Prunus persica
PRUPE_ppa015026mg
I
0.866
Pm030202
Prunus mume
Pm030202
I
0.866
Cagra.1681s0023
Capsella grandiflora
Cagra.1681s0023
I
0.866
Carubv10013748m.g
Capsella rubella
Carubv10013748m.g
I
0.866
GLYMA06G23410
Glycine max
GLYMA06G23410
N
0.861
Gorai.007G007500
Gossypium raimondii
Gorai.007G007500
I
0.856
Lus10035055.g
Linum usitatissimum
Lus10035055.g
I
0.854
GRMZM2G110242
Zea mays
GRMZM2G110242
I
0.853
Bo5g117410
Brassica oleracea
Bo5g117410
N
0.851
Traes_5DL_46A3B0DAB1
Triticum aestivum
Traes_5DL_46A3B0DAB1
I
0.849
Bra004097
Brassica rapa
Bra004097
I
0.844
cassava32886.m1
Manihot esculenta
cassava32886.m1
I
0.841
Cagra.1125s0016
Capsella grandiflora
Cagra.1125s0016
I
0.841
Pavir.Fa00870
Panicum virgatum
Pavir.Fa00870
I
0.839
30174.m008721
Ricinus communis
30174.m008721
I
0.838
OMERI09G07770
Oryza meridionalis
OMERI09G07770
I
0.836
Bostr.26959s0184
Boechera stricta
Bostr.26959s0184
I
0.836
Cucsa.280880
Cucumis sativus
Cucsa.280880
I
0.834
AC233950.1_FG002
Zea mays
AC233950.1_FG002
I
0.833
mgf024687m
Mimulus guttatus
mgf024687m
I
0.832
Aquca_002_01093
Aquilegia coerulea
Aquca_002_01093
I
0.832
Lus10021713.g
Linum usitatissimum
Lus10021713.g
I
0.832
Pm015499
Prunus mume
Pm015499
I
0.831
Carubv10020555m.g
Capsella rubella
Carubv10020555m.g
I
0.831
POPTR_0012s05660
Populus trichocarpa
POPTR_0012s05660
I
0.829
PRUPE_ppa027156mg
Prunus persica
PRUPE_ppa027156mg
I
0.829
MLOC_70116
Hordeum vulgare
MLOC_70116
I
0.828
Sb01g010690
Sorghum bicolor
Sb01g010690
I
0.828
Cucsa.283930
Cucumis sativus
Cucsa.283930
I
0.828
SapurV1A.0583s0060
Salix purpurea
SapurV1A.0583s0060
I
0.828
cassava9378.m1
Manihot esculenta
cassava9378.m1
I
0.826
PDK_20s1689851g001
Phoenix dactylifera
PDK_20s1689851g001
I
0.826
TCP1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2001059
I
0.825
Traes_4AL_75D069945
Triticum aestivum
Traes_4AL_75D069945
I
0.825
Traes_4DS_59A46B69A
Triticum aestivum
Traes_4DS_59A46B69A
I
0.825
TRIUR3_31795
Triticum urartu
TRIUR3_31795
I
0.825
30167.m000856
Ricinus communis
30167.m000856
I
0.825
POPTR_0015s03140
Populus trichocarpa
POPTR_0015s03140
I
0.824
F775_01923
Aegilops tauschii
F775_01923
I
0.823
GSMUA_Achr2G22480_001
Musa acuminata
GSMUA_Achr2G22480_001
I
0.823
Traes_4BS_DC076554D
Triticum aestivum
Traes_4BS_DC076554D
I
0.823
Cucsa.238090
Cucumis sativus
Cucsa.238090
I
0.822