CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.198860
(
Cucumis sativus
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03634 (TCP)
IPR005333
Cucsa.198860
T344643_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.198860.1
TCP
98
255
SSKRDRHSKINTLHGPRDRRMRLSLPVAKEFFGLQDMLGVDKASKTVEWLLFQARHAIKKLSKDQQSFHIDGNGDTRSPSSVSDGEVVSGIIDETSTVVNNNDMISTKELEIGRKSTTKKEKRSRVGRKMPFNPLTRECREKARARARARAREKQQQI
Links
Other
TCP
family TFs
Other
Cucumis sativus
TFs
58 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cla019282
Citrullus lanatus
Cla019282
N
0.970
evm.TU.supercontig_13.48
Carica papaya
evm.TU.supercontig_13.48
N
0.915
cassava32886.m1
Manihot esculenta
cassava32886.m1
I
0.912
MDP0000224810
Malus domestica
MDP0000224810
N
0.910
POPTR_0012s05660
Populus trichocarpa
POPTR_0012s05660
I
0.908
SapurV1A.0583s0060
Salix purpurea
SapurV1A.0583s0060
I
0.907
POPTR_0015s03140
Populus trichocarpa
POPTR_0015s03140
I
0.903
Gorai.007G007500
Gossypium raimondii
Gorai.007G007500
I
0.902
TCM_012252
Theobroma cacao
TCM_012252
I
0.899
Gorai.008G285300
Gossypium raimondii
Gorai.008G285300
I
0.899
GLYMA17G13065
Glycine max
GLYMA17G13065
I
0.898
MDP0000219838
Malus domestica
MDP0000219838
N
0.898
Eucgr.B00699
Eucalyptus grandis
Eucgr.B00699
I
0.897
chr4.LjB15O07.110.nc
Lotus japonicus
chr4.LjB15O07.110.nc
I
0.895
GLYMA05G07943
Glycine max
GLYMA05G07943
I
0.890
cassava9378.m1
Manihot esculenta
cassava9378.m1
I
0.888
GLYMA04G22407
Glycine max
GLYMA04G22407
I
0.884
GLYMA06G23410
Glycine max
GLYMA06G23410
N
0.882
MTR_4g111935
Medicago truncatula
MTR_4g111935
I
0.879
Ciclev10024246m.g
Citrus clementina
Ciclev10024246m.g
I
0.879
orange1.1g035911m.g
Citrus sinensis
orange1.1g035911m.g
I
0.879
30174.m008721
Ricinus communis
30174.m008721
I
0.878
Cucsa.113660
Cucumis sativus
Cucsa.113660
N
0.878
Bostr.19424s0807
Boechera stricta
Bostr.19424s0807
I
0.876
SapurV1A.0301s0010
Salix purpurea
SapurV1A.0301s0010
I
0.872
SapurV1A.1895s0010
Salix purpurea
SapurV1A.1895s0010
I
0.868
SapurV1A.1895s0020
Salix purpurea
SapurV1A.1895s0020
I
0.868
Thhalv10021948m.g
Eutrema salsugineum
Thhalv10021948m.g
N
0.868
Bo1g117490
Brassica oleracea
Bo1g117490
I
0.864
Bra001710
Brassica rapa
Bra001710
I
0.864
Bra037579
Brassica rapa
Bra037579
I
0.864
PRUPE_ppa015026mg
Prunus persica
PRUPE_ppa015026mg
I
0.864
Pm030202
Prunus mume
Pm030202
I
0.864
BRC1
Arabidopsis thaliana
AT3G18550
I
0.863
Bo3g071560
Brassica oleracea
Bo3g071560
I
0.861
Cla018797
Citrullus lanatus
Cla018797
N
0.855
Solyc03g119770.2
Solanum lycopersicum
Solyc03g119770.2
I
0.853
BRC1
Arabidopsis lyrata
scaffold_302193.1
N
0.852
PGSC0003DMG400005705
Solanum tuberosum
PGSC0003DMG400005705
I
0.851
Cagra.1681s0023
Capsella grandiflora
Cagra.1681s0023
I
0.851
Carubv10013748m.g
Capsella rubella
Carubv10013748m.g
I
0.851
Bo5g117410
Brassica oleracea
Bo5g117410
N
0.849
Eucgr.K02654
Eucalyptus grandis
Eucgr.K02654
I
0.845
Aquca_026_00208
Aquilegia coerulea
Aquca_026_00208
I
0.841
PGSC0003DMG400004054
Solanum tuberosum
PGSC0003DMG400004054
N
0.832
Solyc06g069240.1
Solanum lycopersicum
Solyc06g069240.1
N
0.831
SapurV1A.0304s0080
Salix purpurea
SapurV1A.0304s0080
I
0.828
TCM_011874
Theobroma cacao
TCM_011874
I
0.827
29738.m001041
Ricinus communis
29738.m001041
I
0.826
Gorai.001G200400
Gossypium raimondii
Gorai.001G200400
I
0.825
Gorai.008G186800
Gossypium raimondii
Gorai.008G186800
I
0.825
BGIOSGA030744
Oryza indica
BGIOSGA030744
I
0.824
OBART09G10040
Oryza barthii
OBART09G10040
I
0.824
OGLUM09G10300
Oryza glumaepatula
OGLUM09G10300
I
0.824
ONIVA09G09540
Oryza nivara
ONIVA09G09540
I
0.824
ORUFI09G10660
Oryza rufipogon
ORUFI09G10660
I
0.824
OS09G0410500
Oryza sativa
OS09G0410500
I
0.824
F775_01923
Aegilops tauschii
F775_01923
I
0.822