CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.283930
(
Cucumis sativus
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03634 (TCP)
IPR005333
Cucsa.283930
T344649_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS
SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.923
0.508
PK19717.1
M01318_2.00
Cannabis sativa
GGGSCCCMC
GKGGGSCCC
PBM
Lambert et al.(2019)
pTH10142
0.864
0.500
TCP1
M07276_2.00
Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY
Dap-seq
OMalley et al.(2016)
TCP1_col_a
0.856
0.452
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.283930.1
TCP
85
210
MKKKDRHSKICTSKGPRDRRMRLSLEIARNFFDLQDMLGFDKASKTVEWLFTKSRSAIKEVKEKYLSEAKSKSSCYSSTDLVTNLYKEVLPSGKKRRRRLRIVDKESRYKARARARERTRAKSIQR
Links
Other
TCP
family TFs
Other
Cucumis sativus
TFs
113 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
gww1.7.1.139.1
Pichia stipitis
gww1.7.1.139.1
N