CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Bostr.19424s0807
(
Boechera stricta
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03634 (TCP)
IPR005333
Bostr.19424s0807
T344711_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TB1
M01312_2.00
Oryza sativa
GGSCCCCCYM
KRGGGGGSCC
PBM
Lambert et al.(2019)
pTH8740
0.836
0.406
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bostr.19424s0807.1.p
TCP
145
307
PSRTDRHSKIKTANGTRDRRMRLSLDVAKEFFGLQDMLGFDKASKTVEWLLTQAKPEIIKIAKTFSHQCGFSSGDESHTRPALGSMDTSSDLCDLASMLTVDDRGSNTNTTETRGNKVDGRSMRGKRKRPEPRTPILKKLSKDERAKARERAKDRTMVKMMMK
Links
Other
TCP
family TFs
Other
Boechera stricta
TFs
84 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BRC1
Arabidopsis thaliana
AT3G18550
I
0.974
BRC1
Arabidopsis lyrata
scaffold_302193.1
N
0.970
Bra001710
Brassica rapa
Bra001710
I
0.969
Cagra.1681s0023
Capsella grandiflora
Cagra.1681s0023
I
0.969
Carubv10013748m.g
Capsella rubella
Carubv10013748m.g
I
0.969
Thhalv10021948m.g
Eutrema salsugineum
Thhalv10021948m.g
N
0.965
Bo5g117410
Brassica oleracea
Bo5g117410
N
0.959
Bo3g071560
Brassica oleracea
Bo3g071560
I
0.957
Bo1g117490
Brassica oleracea
Bo1g117490
I
0.949
Bra037579
Brassica rapa
Bra037579
I
0.949
Gorai.007G007500
Gossypium raimondii
Gorai.007G007500
I
0.890
GLYMA17G13065
Glycine max
GLYMA17G13065
I
0.889
evm.TU.supercontig_13.48
Carica papaya
evm.TU.supercontig_13.48
N
0.887
Gorai.008G285300
Gossypium raimondii
Gorai.008G285300
I
0.880
GLYMA04G22407
Glycine max
GLYMA04G22407
I
0.876
Cucsa.198860
Cucumis sativus
Cucsa.198860
N
0.876
Cla019282
Citrullus lanatus
Cla019282
N
0.875
Cucsa.113660
Cucumis sativus
Cucsa.113660
N
0.875
TCM_012252
Theobroma cacao
TCM_012252
I
0.873
chr4.LjB15O07.110.nc
Lotus japonicus
chr4.LjB15O07.110.nc
I
0.871
30174.m008721
Ricinus communis
30174.m008721
I
0.868
GLYMA05G07943
Glycine max
GLYMA05G07943
I
0.864
GLYMA06G23410
Glycine max
GLYMA06G23410
N
0.864
MDP0000224810
Malus domestica
MDP0000224810
N
0.864
MTR_4g111935
Medicago truncatula
MTR_4g111935
I
0.863
GRMZM2G064628
Zea mays
GRMZM2G064628
I
0.862
F775_01923
Aegilops tauschii
F775_01923
I
0.860
POPTR_0015s03140
Populus trichocarpa
POPTR_0015s03140
I
0.860
SapurV1A.0301s0010
Salix purpurea
SapurV1A.0301s0010
I
0.860
SapurV1A.1895s0010
Salix purpurea
SapurV1A.1895s0010
I
0.859
SapurV1A.1895s0020
Salix purpurea
SapurV1A.1895s0020
I
0.859
Si015230m.g
Setaria italica
Si015230m.g
I
0.858
Cla018797
Citrullus lanatus
Cla018797
N
0.854
Sb02g024450
Sorghum bicolor
Sb02g024450
I
0.853
cassava32886.m1
Manihot esculenta
cassava32886.m1
I
0.851
Eucgr.B00699
Eucalyptus grandis
Eucgr.B00699
I
0.851
LPERR09G06870
Leersia perrieri
LPERR09G06870
I
0.849
GRMZM2G055024
Zea mays
GRMZM2G055024
I
0.848
LPERR03G25950
Leersia perrieri
LPERR03G25950
I
0.848
Ciclev10024246m.g
Citrus clementina
Ciclev10024246m.g
I
0.848
MDP0000219838
Malus domestica
MDP0000219838
N
0.848
orange1.1g035911m.g
Citrus sinensis
orange1.1g035911m.g
I
0.848
SapurV1A.0583s0060
Salix purpurea
SapurV1A.0583s0060
I
0.847
Pavir.Fb01590
Panicum virgatum
Pavir.Fb01590
I
0.846
BGIOSGA030744
Oryza indica
BGIOSGA030744
I
0.844
OBART09G10040
Oryza barthii
OBART09G10040
I
0.844
OGLUM09G10300
Oryza glumaepatula
OGLUM09G10300
I
0.844
ONIVA09G09540
Oryza nivara
ONIVA09G09540
I
0.844
ORUFI09G10660
Oryza rufipogon
ORUFI09G10660
I
0.844
OS09G0410500
Oryza sativa
OS09G0410500
I
0.844
Pavir.Ib04362
Panicum virgatum
Pavir.Ib04362
I
0.844
cassava9378.m1
Manihot esculenta
cassava9378.m1
I
0.843
LjSGA_018294.2
Lotus japonicus
LjSGA_018294.2
I
0.842
GRMZM2G060319
Zea mays
GRMZM2G060319
I
0.841
OPUNC09G08520
Oryza punctata
OPUNC09G08520
I
0.840
POPTR_0012s05660
Populus trichocarpa
POPTR_0012s05660
I
0.839
Sb01g010690
Sorghum bicolor
Sb01g010690
I
0.839
Pavir.Ia00838
Panicum virgatum
Pavir.Ia00838
I
0.839
Si038692m.g
Setaria italica
Si038692m.g
I
0.837
BGIOSGA013417
Oryza indica
BGIOSGA013417
I
0.836
OGLUM03G31540
Oryza glumaepatula
OGLUM03G31540
I
0.836
ONIVA03G32600
Oryza nivara
ONIVA03G32600
I
0.836
ORUFI03G32570
Oryza rufipogon
ORUFI03G32570
I
0.836
TB1
Oryza sativa
OS03G0706500
D
0.836
Pavir.Fa00870
Panicum virgatum
Pavir.Fa00870
I
0.836
GRMZM2G166687
Zea mays
GRMZM2G166687
I
0.835
Sb07g021140
Sorghum bicolor
Sb07g021140
I
0.835
BRADI1G11060
Brachypodium distachyon
BRADI1G11060
I
0.834
OBART03G31290
Oryza barthii
OBART03G31290
I
0.832
OMERI03G27910
Oryza meridionalis
OMERI03G27910
I
0.832
ORGLA03G0289500
Oryza glaberrima
ORGLA03G0289500
I
0.832
Eucgr.K02654
Eucalyptus grandis
Eucgr.K02654
I
0.832
OMERI09G07770
Oryza meridionalis
OMERI09G07770
I
0.831
BRADI3G36590
Brachypodium distachyon
BRADI3G36590
N
0.829
Traes_5BL_19F383CC71
Triticum aestivum
Traes_5BL_19F383CC71
I
0.829
OMERI08G12900
Oryza meridionalis
OMERI08G12900
I
0.828
OPUNC03G28490
Oryza punctata
OPUNC03G28490
I
0.828
OPUNC08G13710
Oryza punctata
OPUNC08G13710
I
0.828
Si033183m.g
Setaria italica
Si033183m.g
I
0.828
AC233950.1_FG002
Zea mays
AC233950.1_FG002
I
0.826
BRADI4G29980
Brachypodium distachyon
BRADI4G29980
I
0.826
GRMZM2G110242
Zea mays
GRMZM2G110242
I
0.824
MLOC_58142
Hordeum vulgare
MLOC_58142
I
0.823
PGSC0003DMG400005705
Solanum tuberosum
PGSC0003DMG400005705
I
0.823