Bostr.26959s0184 (Boechera stricta)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Bostr.26959s0184 T344718_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.926 0.577
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.896 0.389
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.865 0.436
TB1
M01312_2.00 		Oryza sativa
GGSCCCCCYM
KRGGGGGSCC		 PBM
Lambert et al.(2019)
pTH8740 		0.830 0.383
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.26959s0184.1.p TCP 88 236

Links

Other TCP family TFs
Other Boechera stricta TFs

126 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.967
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.957
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.949
Bo6g103670 Brassica oleracea Bo6g103670 I 0.935
Bra004097 Brassica rapa Bra004097 I 0.933
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.932
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.931
TCP1 Arabidopsis thaliana AT1G67260 D 0.926
Bo6g099040 Brassica oleracea Bo6g099040 I 0.920
Bra004212 Brassica rapa Bra004212 I 0.919
Bra034010 Brassica rapa Bra034010 I 0.916
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.913
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.909
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.908
Bo2g055640 Brassica oleracea Bo2g055640 I 0.907
30167.m000856 Ricinus communis 30167.m000856 I 0.904
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.901
PK12240.1 Cannabis sativa PK12240.1 D 0.896
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.893
Pm015499 Prunus mume Pm015499 I 0.892
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.892
Cla016709 Citrullus lanatus Cla016709 I 0.890
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.889
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.889
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.889
MDP0000272980 Malus domestica MDP0000272980 I 0.889
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.888
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.886
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.885
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.885
TCM_019518 Theobroma cacao TCM_019518 I 0.884
BRC2 Arabidopsis thaliana AT1G68800 I 0.883
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.882
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.880
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.880
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.880
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I 0.879
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I 0.878
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I 0.878
TRIUR3_31795 Triticum urartu TRIUR3_31795 I 0.878
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.878
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.874
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.873
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.871
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.870
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.869
Sb01g010690 Sorghum bicolor Sb01g010690 I 0.867
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.866
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.866
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.866
PK19717.1 Cannabis sativa PK19717.1 D 0.865
mgf019480m Mimulus guttatus mgf019480m I 0.863
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.863
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.863
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.859
29738.m001041 Ricinus communis 29738.m001041 I 0.858
mgf022233m Mimulus guttatus mgf022233m I 0.858
AC233950.1_FG002 Zea mays AC233950.1_FG002 I 0.856
OPUNC03G28490 Oryza punctata OPUNC03G28490 I 0.856
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.856
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.856
mgf024687m Mimulus guttatus mgf024687m I 0.854
Cla002355 Citrullus lanatus Cla002355 I 0.853
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.852
Bo2g061250 Brassica oleracea Bo2g061250 I 0.851
Bra038350 Brassica rapa Bra038350 I 0.851
GRMZM2G031905 Zea mays GRMZM2G031905 I 0.851
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.850
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.850
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.849
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.849
Cla007227 Citrullus lanatus Cla007227 I 0.849
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.847
Pm030202 Prunus mume Pm030202 I 0.847
MDP0000173048 Malus domestica MDP0000173048 I 0.847
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.847
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.846
BRADI1G11060 Brachypodium distachyon BRADI1G11060 I 0.845
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.845
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.844
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.844
GRMZM2G062711 Zea mays GRMZM2G062711 I 0.843
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.843
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.843
TCM_012252 Theobroma cacao TCM_012252 I 0.843
Pm029002 Prunus mume Pm029002 I 0.843
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.843
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.843
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.843
30174.m008721 Ricinus communis 30174.m008721 I 0.842
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.842
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.842
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.842
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.841
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.841
PDK_20s1689851g001 Phoenix dactylifera PDK_20s1689851g001 I 0.840
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.839
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.837
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.836
Cucsa.113660 Cucumis sativus Cucsa.113660 N 0.836
BRADI4G29980 Brachypodium distachyon BRADI4G29980 I 0.835
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.835
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.834
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.834
TCM_011874 Theobroma cacao TCM_011874 I 0.834
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.833
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.833
mgf026636m Mimulus guttatus mgf026636m I 0.832
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.832
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.831
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.831
BGIOSGA013417 Oryza indica BGIOSGA013417 I 0.830
OGLUM03G31540 Oryza glumaepatula OGLUM03G31540 I 0.830
OMERI09G07770 Oryza meridionalis OMERI09G07770 I 0.830
ONIVA03G32600 Oryza nivara ONIVA03G32600 I 0.830
ORUFI03G32570 Oryza rufipogon ORUFI03G32570 I 0.830
TB1 Oryza sativa OS03G0706500 D 0.830
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.829
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.829
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.827
GLYMA06G23410 Glycine max GLYMA06G23410 N 0.825
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.825
MTR_4g111935 Medicago truncatula MTR_4g111935 I 0.824
Lus10003078.g Linum usitatissimum Lus10003078.g I 0.824
Pavir.Fa00870 Panicum virgatum Pavir.Fa00870 I 0.824
AC190734.2_FG003 Zea mays AC190734.2_FG003 I 0.823