CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.1681s0023
(
Capsella grandiflora
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03634 (TCP)
IPR005333
Cagra.1681s0023
T344734_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TB1
M01312_2.00
Oryza sativa
GGSCCCCCYM
KRGGGGGSCC
PBM
Lambert et al.(2019)
pTH8740
0.838
0.410
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.1681s0023.1.p
TCP
150
313
PSRTDRHSKIKTAKGTRDRRMRLSLDVARELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIAKTLSHQCGFSSGDESQTRPALGSMDTSSDLYELASMWTVDDRGSNTNTTVETRGNKVDGRSMRGKRKRPEPRTPILKKLSKDERAKARERAKDRTMEKMMMK
Links
Other
TCP
family TFs
Other
Capsella grandiflora
TFs
90 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10013748m.g
Capsella rubella
Carubv10013748m.g
I
0.983
BRC1
Arabidopsis thaliana
AT3G18550
I
0.975
BRC1
Arabidopsis lyrata
scaffold_302193.1
N
0.971
Bra001710
Brassica rapa
Bra001710
I
0.970
Thhalv10021948m.g
Eutrema salsugineum
Thhalv10021948m.g
N
0.970
Bo5g117410
Brassica oleracea
Bo5g117410
N
0.969
Bostr.19424s0807
Boechera stricta
Bostr.19424s0807
I
0.969
Bo3g071560
Brassica oleracea
Bo3g071560
I
0.965
Bo1g117490
Brassica oleracea
Bo1g117490
I
0.958
Bra037579
Brassica rapa
Bra037579
I
0.958
TCM_012252
Theobroma cacao
TCM_012252
I
0.885
Cla019282
Citrullus lanatus
Cla019282
N
0.875
Gorai.007G007500
Gossypium raimondii
Gorai.007G007500
I
0.873
30174.m008721
Ricinus communis
30174.m008721
I
0.870
Cucsa.113660
Cucumis sativus
Cucsa.113660
N
0.866
Gorai.008G285300
Gossypium raimondii
Gorai.008G285300
I
0.866
cassava32886.m1
Manihot esculenta
cassava32886.m1
I
0.865
MDP0000224810
Malus domestica
MDP0000224810
N
0.865
F775_01923
Aegilops tauschii
F775_01923
I
0.862
GLYMA17G13065
Glycine max
GLYMA17G13065
I
0.861
evm.TU.supercontig_13.48
Carica papaya
evm.TU.supercontig_13.48
N
0.861
Ciclev10024246m.g
Citrus clementina
Ciclev10024246m.g
I
0.860
orange1.1g035911m.g
Citrus sinensis
orange1.1g035911m.g
I
0.860
GRMZM2G064628
Zea mays
GRMZM2G064628
I
0.858
LPERR03G25950
Leersia perrieri
LPERR03G25950
I
0.854
Si015230m.g
Setaria italica
Si015230m.g
I
0.854
MTR_4g111935
Medicago truncatula
MTR_4g111935
I
0.853
cassava9378.m1
Manihot esculenta
cassava9378.m1
I
0.853
SapurV1A.1895s0010
Salix purpurea
SapurV1A.1895s0010
I
0.853
SapurV1A.1895s0020
Salix purpurea
SapurV1A.1895s0020
I
0.853
POPTR_0015s03140
Populus trichocarpa
POPTR_0015s03140
I
0.852
SapurV1A.0583s0060
Salix purpurea
SapurV1A.0583s0060
I
0.852
GRMZM2G055024
Zea mays
GRMZM2G055024
I
0.851
Cucsa.198860
Cucumis sativus
Cucsa.198860
N
0.851
SapurV1A.0301s0010
Salix purpurea
SapurV1A.0301s0010
I
0.851
Sb02g024450
Sorghum bicolor
Sb02g024450
I
0.850
Pavir.Fb01590
Panicum virgatum
Pavir.Fb01590
I
0.848
POPTR_0012s05660
Populus trichocarpa
POPTR_0012s05660
I
0.847
Eucgr.B00699
Eucalyptus grandis
Eucgr.B00699
I
0.847
LPERR09G06870
Leersia perrieri
LPERR09G06870
I
0.845
Pavir.Ia00838
Panicum virgatum
Pavir.Ia00838
I
0.845
Pavir.Ib04362
Panicum virgatum
Pavir.Ib04362
I
0.845
BGIOSGA030744
Oryza indica
BGIOSGA030744
I
0.841
GLYMA04G22407
Glycine max
GLYMA04G22407
I
0.841
OBART09G10040
Oryza barthii
OBART09G10040
I
0.841
OGLUM09G10300
Oryza glumaepatula
OGLUM09G10300
I
0.841
ONIVA09G09540
Oryza nivara
ONIVA09G09540
I
0.841
ORUFI09G10660
Oryza rufipogon
ORUFI09G10660
I
0.841
OS09G0410500
Oryza sativa
OS09G0410500
I
0.841
Sb01g010690
Sorghum bicolor
Sb01g010690
I
0.841
Eucgr.K02654
Eucalyptus grandis
Eucgr.K02654
I
0.841
BRADI1G11060
Brachypodium distachyon
BRADI1G11060
I
0.840
Cla018797
Citrullus lanatus
Cla018797
N
0.840
Si038692m.g
Setaria italica
Si038692m.g
I
0.839
Pavir.Fa00870
Panicum virgatum
Pavir.Fa00870
I
0.839
BGIOSGA013417
Oryza indica
BGIOSGA013417
I
0.838
OGLUM03G31540
Oryza glumaepatula
OGLUM03G31540
I
0.838
ONIVA03G32600
Oryza nivara
ONIVA03G32600
I
0.838
ORUFI03G32570
Oryza rufipogon
ORUFI03G32570
I
0.838
TB1
Oryza sativa
OS03G0706500
D
0.838
GRMZM2G060319
Zea mays
GRMZM2G060319
I
0.837
OPUNC09G08520
Oryza punctata
OPUNC09G08520
I
0.837
chr4.LjB15O07.110.nc
Lotus japonicus
chr4.LjB15O07.110.nc
I
0.836
GLYMA06G23410
Glycine max
GLYMA06G23410
N
0.835
MDP0000219838
Malus domestica
MDP0000219838
N
0.835
OBART03G31290
Oryza barthii
OBART03G31290
I
0.834
OMERI03G27910
Oryza meridionalis
OMERI03G27910
I
0.834
ORGLA03G0289500
Oryza glaberrima
ORGLA03G0289500
I
0.834
OMERI09G07770
Oryza meridionalis
OMERI09G07770
I
0.833
BGIOSGA028717
Oryza indica
BGIOSGA028717
I
0.832
OGLUM08G16380
Oryza glumaepatula
OGLUM08G16380
I
0.832
ORUFI08G17540
Oryza rufipogon
ORUFI08G17540
I
0.832
OS08G0432300
Oryza sativa
OS08G0432300
I
0.832
GRMZM2G166687
Zea mays
GRMZM2G166687
I
0.831
OMERI08G12900
Oryza meridionalis
OMERI08G12900
I
0.831
OPUNC03G28490
Oryza punctata
OPUNC03G28490
I
0.831
OPUNC08G13710
Oryza punctata
OPUNC08G13710
I
0.831
Sb07g021140
Sorghum bicolor
Sb07g021140
I
0.831
Traes_5BL_19F383CC71
Triticum aestivum
Traes_5BL_19F383CC71
I
0.831
BRADI4G29980
Brachypodium distachyon
BRADI4G29980
I
0.830
AC233950.1_FG002
Zea mays
AC233950.1_FG002
I
0.829
GLYMA05G07943
Glycine max
GLYMA05G07943
I
0.827
GRMZM2G110242
Zea mays
GRMZM2G110242
I
0.827
MLOC_58142
Hordeum vulgare
MLOC_58142
I
0.826
BRADI3G36590
Brachypodium distachyon
BRADI3G36590
N
0.825
Si033183m.g
Setaria italica
Si033183m.g
I
0.824
Traes_5DL_46A3B0DAB1
Triticum aestivum
Traes_5DL_46A3B0DAB1
I
0.824
PRUPE_ppa015026mg
Prunus persica
PRUPE_ppa015026mg
I
0.822
TRIUR3_20728
Triticum urartu
TRIUR3_20728
I
0.822
Pm030202
Prunus mume
Pm030202
I
0.822