CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_13.48
(
Carica papaya
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03634 (TCP)
IPR005333
evm.TU.supercontig_13.48
T344811_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_13.48
TCP
149
296
SCKRDRHSKINTAKGPRDRRMRLSLEVAKEFFGLQDMLGYEKASKTVEWLLIQARTEIKKLVKSFPGRTNYSCSTGASSTSECEVISGILNSGTHKRNKAKETDISLLAKEKKIKQLRKRAFCPLAKDLRAKARERARARTREKFWNR
Links
Other
TCP
family TFs
Other
Carica papaya
TFs
72 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cucsa.198860
Cucumis sativus
Cucsa.198860
N
0.915
Gorai.008G285300
Gossypium raimondii
Gorai.008G285300
I
0.912
Gorai.007G007500
Gossypium raimondii
Gorai.007G007500
I
0.911
TCM_012252
Theobroma cacao
TCM_012252
I
0.910
MTR_4g111935
Medicago truncatula
MTR_4g111935
I
0.906
POPTR_0015s03140
Populus trichocarpa
POPTR_0015s03140
I
0.904
cassava9378.m1
Manihot esculenta
cassava9378.m1
I
0.903
Cla019282
Citrullus lanatus
Cla019282
N
0.899
chr4.LjB15O07.110.nc
Lotus japonicus
chr4.LjB15O07.110.nc
I
0.897
Bra001710
Brassica rapa
Bra001710
I
0.892
GLYMA05G07943
Glycine max
GLYMA05G07943
I
0.892
GLYMA17G13065
Glycine max
GLYMA17G13065
I
0.891
Thhalv10021948m.g
Eutrema salsugineum
Thhalv10021948m.g
N
0.890
Bo1g117490
Brassica oleracea
Bo1g117490
I
0.889
Bra037579
Brassica rapa
Bra037579
I
0.889
GLYMA04G22407
Glycine max
GLYMA04G22407
I
0.889
PRUPE_ppa015026mg
Prunus persica
PRUPE_ppa015026mg
I
0.889
Pm030202
Prunus mume
Pm030202
I
0.889
Bo3g071560
Brassica oleracea
Bo3g071560
I
0.888
cassava32886.m1
Manihot esculenta
cassava32886.m1
I
0.887
Bostr.19424s0807
Boechera stricta
Bostr.19424s0807
I
0.887
Ciclev10024246m.g
Citrus clementina
Ciclev10024246m.g
I
0.885
orange1.1g035911m.g
Citrus sinensis
orange1.1g035911m.g
I
0.885
POPTR_0012s05660
Populus trichocarpa
POPTR_0012s05660
I
0.884
SapurV1A.0583s0060
Salix purpurea
SapurV1A.0583s0060
I
0.882
GLYMA06G23410
Glycine max
GLYMA06G23410
N
0.881
Cucsa.113660
Cucumis sativus
Cucsa.113660
N
0.881
BRC1
Arabidopsis lyrata
scaffold_302193.1
N
0.880
SapurV1A.0301s0010
Salix purpurea
SapurV1A.0301s0010
I
0.878
SapurV1A.1895s0010
Salix purpurea
SapurV1A.1895s0010
I
0.877
SapurV1A.1895s0020
Salix purpurea
SapurV1A.1895s0020
I
0.877
Eucgr.B00699
Eucalyptus grandis
Eucgr.B00699
I
0.876
BRC1
Arabidopsis thaliana
AT3G18550
I
0.874
30174.m008721
Ricinus communis
30174.m008721
I
0.872
MDP0000219838
Malus domestica
MDP0000219838
N
0.872
MDP0000224810
Malus domestica
MDP0000224810
N
0.869
Bo5g117410
Brassica oleracea
Bo5g117410
N
0.864
Cagra.1681s0023
Capsella grandiflora
Cagra.1681s0023
I
0.861
Carubv10013748m.g
Capsella rubella
Carubv10013748m.g
I
0.861
Aquca_026_00208
Aquilegia coerulea
Aquca_026_00208
I
0.850
29738.m001041
Ricinus communis
29738.m001041
I
0.849
SapurV1A.0304s0080
Salix purpurea
SapurV1A.0304s0080
I
0.844
TCM_019518
Theobroma cacao
TCM_019518
I
0.842
LjSGA_018294.2
Lotus japonicus
LjSGA_018294.2
I
0.840
POPTR_0008s11470
Populus trichocarpa
POPTR_0008s11470
I
0.839
Gorai.001G200400
Gossypium raimondii
Gorai.001G200400
I
0.839
Ciclev10033382m.g
Citrus clementina
Ciclev10033382m.g
I
0.837
orange1.1g039323m.g
Citrus sinensis
orange1.1g039323m.g
I
0.837
Sb07g021140
Sorghum bicolor
Sb07g021140
I
0.836
cassava16230.m1
Manihot esculenta
cassava16230.m1
I
0.836
Cucsa.283930
Cucumis sativus
Cucsa.283930
I
0.836
TCM_011874
Theobroma cacao
TCM_011874
I
0.835
Cla018797
Citrullus lanatus
Cla018797
N
0.835
Lus10035055.g
Linum usitatissimum
Lus10035055.g
I
0.833
POPTR_0010s14030
Populus trichocarpa
POPTR_0010s14030
I
0.832
BRC2
Arabidopsis thaliana
AT1G68800
I
0.831
MDP0000173048
Malus domestica
MDP0000173048
I
0.831
OPUNC09G08520
Oryza punctata
OPUNC09G08520
I
0.829
GRMZM2G166687
Zea mays
GRMZM2G166687
I
0.828
Lus10021713.g
Linum usitatissimum
Lus10021713.g
I
0.828
PGSC0003DMG400004054
Solanum tuberosum
PGSC0003DMG400004054
N
0.827
Solyc06g069240.1
Solanum lycopersicum
Solyc06g069240.1
N
0.827
Bostr.26959s0002
Boechera stricta
Bostr.26959s0002
I
0.826
Cagra.1157s0001
Capsella grandiflora
Cagra.1157s0001
I
0.826
Carubv10020487m.g
Capsella rubella
Carubv10020487m.g
I
0.826
GRMZM2G060319
Zea mays
GRMZM2G060319
I
0.824
cassava10552.m1
Manihot esculenta
cassava10552.m1
I
0.824
Eucgr.K02654
Eucalyptus grandis
Eucgr.K02654
I
0.824
Cla002355
Citrullus lanatus
Cla002355
I
0.823
Aquca_002_01093
Aquilegia coerulea
Aquca_002_01093
I
0.823
Gorai.008G186800
Gossypium raimondii
Gorai.008G186800
I
0.823
BRC2
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_2000933
I
0.822