Gorai.008G186800 (Gossypium raimondii)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Gorai.008G186800 T344866_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.896 0.446
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.855 0.414
TCP1
M07276_2.00 		Arabidopsis thaliana
RNNNDNHNDNNNDDDNNNRKGGGRCCCACH
DGTGGGYCCCMYNNNHHHNNNHNDNHNNNY		 Dap-seq
OMalley et al.(2016)
TCP1_col_a 		0.847 0.408
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.008G186800.1 TCP 117 273

Links

Other TCP family TFs
Other Gossypium raimondii TFs

105 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_011874 Theobroma cacao TCM_011874 I 0.969
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.953
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.953
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.953
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.952
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.949
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.948
29738.m001041 Ricinus communis 29738.m001041 I 0.942
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.942
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.938
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.933
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.930
MDP0000173048 Malus domestica MDP0000173048 I 0.927
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.925
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.924
Pm029002 Prunus mume Pm029002 I 0.924
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.920
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.913
Cla002355 Citrullus lanatus Cla002355 I 0.911
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.911
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.910
MDP0000272980 Malus domestica MDP0000272980 I 0.910
BRC2 Arabidopsis thaliana AT1G68800 I 0.909
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.906
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.903
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.903
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.903
Bo2g061250 Brassica oleracea Bo2g061250 I 0.900
Bra038350 Brassica rapa Bra038350 I 0.900
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.900
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.900
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.898
Lus10021713.g Linum usitatissimum Lus10021713.g I 0.896
PK12240.1 Cannabis sativa PK12240.1 D 0.896
Cla007227 Citrullus lanatus Cla007227 I 0.895
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.894
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.892
Cla016709 Citrullus lanatus Cla016709 I 0.891
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.891
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.889
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.887
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.886
mgf026636m Mimulus guttatus mgf026636m I 0.886
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.885
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.882
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.882
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.881
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.881
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.881
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.881
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.878
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.878
POPTR_0015s03140 Populus trichocarpa POPTR_0015s03140 I 0.876
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.874
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.872
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.870
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.869
TCM_019518 Theobroma cacao TCM_019518 I 0.867
30167.m000856 Ricinus communis 30167.m000856 I 0.867
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.867
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.867
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.865
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.863
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.863
mgf019480m Mimulus guttatus mgf019480m I 0.863
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.863
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.862
POPTR_0012s05660 Populus trichocarpa POPTR_0012s05660 I 0.861
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.861
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.860
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.860
SapurV1A.0301s0010 Salix purpurea SapurV1A.0301s0010 I 0.855
SapurV1A.1895s0010 Salix purpurea SapurV1A.1895s0010 I 0.855
SapurV1A.1895s0020 Salix purpurea SapurV1A.1895s0020 I 0.855
PK19717.1 Cannabis sativa PK19717.1 D 0.855
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.852
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.852
Bra004212 Brassica rapa Bra004212 I 0.851
Bo6g103670 Brassica oleracea Bo6g103670 I 0.849
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.849
TCP1 Arabidopsis thaliana AT1G67260 D 0.847
GSMUA_Achr10G25520_001 Musa acuminata GSMUA_Achr10G25520_001 I 0.846
30174.m008721 Ricinus communis 30174.m008721 I 0.846
Cla019282 Citrullus lanatus Cla019282 N 0.844
Bo6g099040 Brassica oleracea Bo6g099040 I 0.843
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.843
Pm015499 Prunus mume Pm015499 I 0.843
MDP0000224810 Malus domestica MDP0000224810 N 0.843
Eucgr.K02654 Eucalyptus grandis Eucgr.K02654 I 0.840
Bra004097 Brassica rapa Bra004097 I 0.838
Solyc03g045030.1 Solanum lycopersicum Solyc03g045030.1 I 0.836
mgf022233m Mimulus guttatus mgf022233m I 0.835
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.833
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.833
Pm030202 Prunus mume Pm030202 I 0.833
PGSC0003DMG400004054 Solanum tuberosum PGSC0003DMG400004054 N 0.831
Solyc06g069240.1 Solanum lycopersicum Solyc06g069240.1 N 0.831
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.829
Bra034010 Brassica rapa Bra034010 I 0.826
mgf024687m Mimulus guttatus mgf024687m I 0.826
PGSC0003DMG400003362 Solanum tuberosum PGSC0003DMG400003362 I 0.825
Cucsa.198860 Cucumis sativus Cucsa.198860 N 0.825
LPERR03G25950 Leersia perrieri LPERR03G25950 I 0.823
evm.TU.supercontig_13.48 Carica papaya evm.TU.supercontig_13.48 N 0.823
Lus10034072.g Linum usitatissimum Lus10034072.g I 0.822