Lus10021713.g (Linum usitatissimum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Lus10021713.g T344895_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK12240.1
M01314_2.00 		Cannabis sativa
GGGSCCMS
SKGGSCCC		 PBM
Lambert et al.(2019)
pTH10180 		0.932 0.470
PK19717.1
M01318_2.00 		Cannabis sativa
GGGSCCCMC
GKGGGSCCC		 PBM
Lambert et al.(2019)
pTH10142 		0.856 0.508
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10021713 TCP 111 242

Links

Other TCP family TFs
Other Linum usitatissimum TFs

109 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10035055.g Linum usitatissimum Lus10035055.g I 0.976
Bostr.26959s0002 Boechera stricta Bostr.26959s0002 I 0.942
Cagra.1157s0001 Capsella grandiflora Cagra.1157s0001 I 0.942
Carubv10020487m.g Capsella rubella Carubv10020487m.g I 0.942
BRC2 Arabidopsis thaliana AT1G68800 I 0.935
BRC2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000933 I 0.935
PK12240.1 Cannabis sativa PK12240.1 D 0.932
gene03882-v1.0-hybrid Fragaria vesca gene03882-v1.0-hybrid I 0.931
Cucsa.280880 Cucumis sativus Cucsa.280880 I 0.930
MDP0000272980 Malus domestica MDP0000272980 I 0.928
Cucsa.283930 Cucumis sativus Cucsa.283930 I 0.924
SapurV1A.0682s0140 Salix purpurea SapurV1A.0682s0140 I 0.924
POPTR_0017s13980 Populus trichocarpa POPTR_0017s13980 I 0.911
cassava10552.m1 Manihot esculenta cassava10552.m1 I 0.910
Solyc04g006980.1 Solanum lycopersicum Solyc04g006980.1 I 0.909
PGSC0003DMG400007467 Solanum tuberosum PGSC0003DMG400007467 I 0.908
Cla002355 Citrullus lanatus Cla002355 I 0.906
MDP0000173048 Malus domestica MDP0000173048 I 0.906
Ciclev10024246m.g Citrus clementina Ciclev10024246m.g I 0.905
Eucgr.B00699 Eucalyptus grandis Eucgr.B00699 I 0.905
orange1.1g035911m.g Citrus sinensis orange1.1g035911m.g I 0.905
TCM_011874 Theobroma cacao TCM_011874 I 0.900
Aquca_002_01093 Aquilegia coerulea Aquca_002_01093 I 0.900
MTR_1g103380 Medicago truncatula MTR_1g103380 I 0.899
evm.TU.supercontig_1401.1 Carica papaya evm.TU.supercontig_1401.1 I 0.898
Gorai.008G186800 Gossypium raimondii Gorai.008G186800 I 0.896
POPTR_0010s14030 Populus trichocarpa POPTR_0010s14030 I 0.894
SapurV1A.0304s0080 Salix purpurea SapurV1A.0304s0080 I 0.892
BRC2 Vitis vinifera VIT_01s0011g02920 I 0.887
30167.m000856 Ricinus communis 30167.m000856 I 0.887
Ciclev10033382m.g Citrus clementina Ciclev10033382m.g I 0.886
orange1.1g039323m.g Citrus sinensis orange1.1g039323m.g I 0.886
cassava16230.m1 Manihot esculenta cassava16230.m1 I 0.885
Cucsa.031600 Cucumis sativus Cucsa.031600 I 0.885
29738.m001041 Ricinus communis 29738.m001041 I 0.884
chr5.CM0357.550.nc Lotus japonicus chr5.CM0357.550.nc I 0.883
TCP1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001059 I 0.882
PRUPE_ppa016240mg Prunus persica PRUPE_ppa016240mg I 0.881
Solyc05g009900.1 Solanum lycopersicum Solyc05g009900.1 I 0.881
Pm029002 Prunus mume Pm029002 I 0.881
Cucsa.238090 Cucumis sativus Cucsa.238090 I 0.881
mgf024687m Mimulus guttatus mgf024687m I 0.880
MTR_7g018500 Medicago truncatula MTR_7g018500 I 0.878
TCM_012252 Theobroma cacao TCM_012252 I 0.878
GLYMA18G51581 Glycine max GLYMA18G51581 I 0.875
GLYMA04G22407 Glycine max GLYMA04G22407 I 0.874
POPTR_0008s11470 Populus trichocarpa POPTR_0008s11470 I 0.873
PGSC0003DMG400000823 Solanum tuberosum PGSC0003DMG400000823 I 0.870
GLYMA08G28691 Glycine max GLYMA08G28691 I 0.869
Bra004097 Brassica rapa Bra004097 I 0.866
GLYMA17G13065 Glycine max GLYMA17G13065 I 0.866
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.866
Cla007227 Citrullus lanatus Cla007227 I 0.864
LjSGA_018294.2 Lotus japonicus LjSGA_018294.2 I 0.864
Bostr.26959s0184 Boechera stricta Bostr.26959s0184 I 0.863
TCM_019518 Theobroma cacao TCM_019518 I 0.860
Cla016709 Citrullus lanatus Cla016709 I 0.859
Eucgr.J01466 Eucalyptus grandis Eucgr.J01466 I 0.859
chr1.LjB10L14.10.nc Lotus japonicus chr1.LjB10L14.10.nc I 0.859
GRMZM2G031905 Zea mays GRMZM2G031905 I 0.857
Aquca_026_00208 Aquilegia coerulea Aquca_026_00208 I 0.857
Bo2g061250 Brassica oleracea Bo2g061250 I 0.856
Bra038350 Brassica rapa Bra038350 I 0.856
PK19717.1 Cannabis sativa PK19717.1 D 0.856
PGSC0003DMG400005705 Solanum tuberosum PGSC0003DMG400005705 I 0.853
mgf019480m Mimulus guttatus mgf019480m I 0.853
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.853
Solyc03g119770.2 Solanum lycopersicum Solyc03g119770.2 I 0.852
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.849
Bo6g103670 Brassica oleracea Bo6g103670 I 0.845
Sb01g010690 Sorghum bicolor Sb01g010690 I 0.845
TCP1 Vitis vinifera VIT_14s0083g00150 I 0.845
chr2.LjB17A04.40.nc Lotus japonicus chr2.LjB17A04.40.nc I 0.845
GLYMA10G39141 Glycine max GLYMA10G39141 I 0.844
GLYMA05G07943 Glycine max GLYMA05G07943 I 0.843
GLYMA13G07475 Glycine max GLYMA13G07475 I 0.843
GLYMA19G05921 Glycine max GLYMA19G05921 I 0.843
GSMUA_Achr10G25520_001 Musa acuminata GSMUA_Achr10G25520_001 I 0.843
Gorai.008G285300 Gossypium raimondii Gorai.008G285300 I 0.843
GRMZM2G062711 Zea mays GRMZM2G062711 I 0.842
Gorai.007G007500 Gossypium raimondii Gorai.007G007500 I 0.842
Bra004212 Brassica rapa Bra004212 I 0.840
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.840
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.840
GLYMA20G28670 Glycine max GLYMA20G28670 I 0.838
mgf026636m Mimulus guttatus mgf026636m I 0.838
MTR_6g017055 Medicago truncatula MTR_6g017055 I 0.837
MTR_4g111935 Medicago truncatula MTR_4g111935 I 0.836
PRUPE_ppa027156mg Prunus persica PRUPE_ppa027156mg I 0.836
cassava9378.m1 Manihot esculenta cassava9378.m1 I 0.836
mgf022233m Mimulus guttatus mgf022233m I 0.836
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I 0.835
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I 0.835
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I 0.835
TRIUR3_31795 Triticum urartu TRIUR3_31795 I 0.835
Pm015499 Prunus mume Pm015499 I 0.835
Cucsa.113660 Cucumis sativus Cucsa.113660 N 0.832
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.831
Pm030202 Prunus mume Pm030202 I 0.831
Cagra.1125s0016 Capsella grandiflora Cagra.1125s0016 I 0.830
SapurV1A.0583s0060 Salix purpurea SapurV1A.0583s0060 I 0.830
AC233950.1_FG002 Zea mays AC233950.1_FG002 I 0.829
GLYMA06G23410 Glycine max GLYMA06G23410 N 0.828
SELMODRAFT_7330 Selaginella moellendorffii SELMODRAFT_7330 I 0.828
evm.TU.supercontig_13.48 Carica papaya evm.TU.supercontig_13.48 N 0.828
30174.m008721 Ricinus communis 30174.m008721 I 0.826
chr4.LjB15O07.110.nc Lotus japonicus chr4.LjB15O07.110.nc I 0.826
cassava32886.m1 Manihot esculenta cassava32886.m1 I 0.825
Thhalv10019499m.g Eutrema salsugineum Thhalv10019499m.g I 0.825